1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attagtgcagtttgcattgctgtaatcctctcagattgaaaattactcattcagttcttcaggtcagcgacccctataaaattgaacaattgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTTTGTGCTATAGTGGGAG
species | Zea mays |
transcript | GRMZM2G044457_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTTEST: gi|149111501|gb|EE295004.2|EE295004
genomic: ATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
EST: CGAAACCCCAACCTGGAGNNNNNNNCTTCTATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTTEST: gi|60346135|gb|DN213108.1|DN213108
genomic: CGAAACCCCAACCTGGAGTTTTTTTCTTCTATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
EST: CGAAACCCCAACCTGGAGNNNNNNNCTTCTATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTTEST: gi|50334990|gb|CO530116.1|CO530116
genomic: CGAAACCCCAACCTGGAGTTTTTTTCTTCTATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
EST: CGAAACCCCAACCTGGAGNNNNNNNCTTCTATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTTEST: gi|211172233|gb|FL456933.1|FL456933
genomic: CGAAACCCCAACCTGGAGTTTTTTTCTTCTATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
EST: CGAAACCCCAACCTGGAGNNNNNNNCTTCTATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTTEST: gi|91873242|gb|EB403199.1|EB403199
genomic: CGAAACCCCAACCTGGAGTTTTTTTCTTCTATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
EST: CGAAACCCCAACCTGGAGNNNNNNNCTTCTATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTCCCTGACAAACCTTEST: gi|149027083|gb|EE046394.2|EE046394
genomic: CGAAACCCCAACCTGGAGTTTTTTTCTTCTATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
EST: CGAAACCCCAACCTGGAGNNNNNNNCTTCTATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTTEST: gi|211541072|gb|FL347103.1|FL347103
genomic: CGAAACCCCAACCTGGAGTTTTTTTCTTCTATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
EST: CGAAACCCCAACCTGGAGNNNNNNNCTTCTATGATTTCTCACCTATAAAG GTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTT
genomic: CGAAACCCCAACCTGGAGTTTTTTTCTTCTATGATTTCTCACCTATAAAGgtaataatgg ... tgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTT
ctcattcagttcttcaggtcagcgacccctataaaattgaacaattgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTTTGTGCTATAGTGGGAG
ttgtttt CT-rich tract
tataaaattgaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagtgcagtttgcattgctgtaatcctctcagattgaaaattactcattcagttcttcaggtcagcgacccctataaaattgaacaattgttttgcagGTGATATTCACAGAAGAAAGTAGATCCCTACTCCACTACCTGACAAACCTTTGTGCTATAGTGGGAG
- - -tgcagtt
- - - - - - - -attgctg
- - - - - - - - - - - - - - - - - - - - - - - -cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaat