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gttaagtgcataatcctttgatgccattttgaacattataattgggcttctaagttttaataaacaatttggcttatctgaaaagttaaaactttagtctgtactatatagctccttcctatattttcatgaatatgacataatgtttaatgtgccttcttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA
species | Zea mays |
transcript | GRMZM2G044237_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|32835096|gb|CD974774.1|CD974774
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|78092274|gb|DV520648.1|DV520648
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|148938789|gb|EC883127.2|EC883127
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|32928445|gb|CF033257.1|CF033257
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|76917242|gb|DV166726.1|DV166726
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|211349360|gb|FL434476.1|FL434476
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|32833027|gb|CD972705.1|CD972705
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTEST: gi|78027443|gb|DV495830.1|DV495830
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
cttcctatattttcatgaatatgacataatgtttaatgtgccttcttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA
gtttaat putative branch site (score: 4)
tgccttcttct CT-rich tract
tatattttcatgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagtgcataatcctttgatgccattttgaacattataattgggcttctaagttttaataaacaatttggcttatctgaaaagttaaaactttagtctgtactatatagctccttcctatattttcatgaatatgacataatgtttaatgtgccttcttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT