1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgatagcttttactgccattggcatgcgctgtttctgacccatctgaataaaaaaaagacagagcgcgcgtggattatgatgtttctttcgtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGACACGACGAGGGTCGGTTACTTCAAAGGGTACCTCAATTCAGTTGCGCA
species | Zea mays |
transcript | GRMZM2G044092_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGEST: gi|211033638|gb|FL455181.1|FL455181
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGEST: gi|5871791|gb|AW018262.1|AW018262
genomic: TATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGEST: gi|149042712|gb|EE047227.2|EE047227
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCGGGTCCTAAACGEST: gi|71312816|gb|DR792938.1|DR792938
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCTTAAACGEST: gi|6227160|gb|AW155689.1|AW155689
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGEST: gi|67011065|gb|CO439814.1|CO439814
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGACCAATCCGCAACGCTTGACCAGGTCCTAAACGEST: gi|45568386|gb|CK986040.1|CK986040
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGEST: gi|5296321|gb|AI783091.1|AI783091
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCATTTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGEST: gi|78022703|gb|DV491090.1|DV491090
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGEST: gi|6056670|gb|AW091075.1|AW091075
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
EST: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATG GCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
genomic: TTATATAGCGAAGAAGTACAATAATCCAGCAATTTATGTTACTGAGAATGgtaaggcttc ... gtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACG
gaataaaaaaaagacagagcgcgcgtggattatgatgtttctttcgtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGACACGACGAGGGTCGGTTACTTCAAAGGGTACCTCAATTCAGTTGCGCA
tttctttcgt CT-rich tract
aaaaaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatagcttttactgccattggcatgcgctgtttctgacccatctgaataaaaaaaagacagagcgcgcgtggattatgatgtttctttcgtgcatgcagGCATGGATGAAGAGGACGATCAATCCGCAACGCTTGACCAGGTCCTAAACGACACGACGAGGGTCGGTTACTTCAAAGGGTACCTCAATTCAGTTGCGCA
- - - - - tactgcc
- - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - -ccatctg
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa