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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatccatctgaattttaacttttgttactacacagtgagctacctacccaacctgtgtttttctattatatgcattctcctggactgagttgggtctcatctttctgctaaatggctgtaactggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG

Basic information

species Zea mays
transcript GRMZM2G044027_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g16980.5 (Oryza sativa), 3'ss of exon 9
gtaaaatccatctgaattttaacttttgttactacacagtgagctacctacccaacctgtgtttttctattatatgcattctcctggactgagttgggtctcat---ctttctgctaaatggctgtaac---tggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG-------------------------
                                                                                       |   | |||  | |||    |||    ||||||||   |||    | ||| || |||||||||||||||||||||||||||||||||||||||||||                         
------------------------------------------------------------------------------------gtaatgaaattgattttcacgtccttgtcactaaatggtcataatatattgtgttgtaggtgaattcaccatgctggaacttgctgagaatgtgaaggagGTAAGATGAATATCCTGTTGCCGAA

upper sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g16980.2 (Oryza sativa), 3'ss of exon 10
gtaaaatccatctgaattttaacttttgttactacacagtgagctacctacccaacctgtgtttttctattatatgcattctcctggactgag-ttgggtctcatctttctg---ctaaatggctgtaac---tggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
             | |  || || | ||           |        | | | || |||| |  ||| |  ||   || ||   | | |||  |||  | |||  |   ||   ||||||||   |||    | ||| || |||||||||||||||||||||||||||||||||||||||||||
-------------gtagatttacctctgcattcgtttgat------ttttctctacatgtggtaatctgtactagcaatcctgtggtaatgaaattgattttcacgtccttgtcactaaatggtcataatatattgtgttgtagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83278385|gb|DV942393.1|DV942393
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|21393785|gb|BQ538215.1|BQ538215
EST:     CTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: CTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32841175|gb|CD980856.1|CD980856
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCCGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32165002|gb|CD670320.1|CD670320
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|14206834|gb|BG840512.1|BG840512
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32909997|gb|CF014809.1|CF014809
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|71761214|gb|DR959151.1|DR959151
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|5922174|gb|AW055444.1|AW055444
EST:     CCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: CCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32841101|gb|CD980782.1|CD980782
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGA
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGA
EST: gi|7216734|gb|AW562856.1|AW562856
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37397262|gb|CF635926.1|CF635926
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|211032180|gb|FL277400.1|FL277400
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|5058888|gb|AI737364.1|AI737364
EST:     CCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: CCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32850262|gb|CD989943.1|CD989943
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|9952482|gb|BE639065.1|BE639065
EST:     CTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: CTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32830694|gb|CD970372.1|CD970372
EST:     CTGATGAATGGAAACAACACTGGGCCGATTAACTT-GGGAACCCCAG                         TTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: CTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAA-CCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32850632|gb|CD990313.1|CD990313
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCT
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCT
EST: gi|14202329|gb|BG836006.1|BG836006
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGG-AACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|44901196|gb|CK827741.1|CK827741
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|148951040|gb|EC896694.2|EC896694
EST:     GGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: GGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|149097828|gb|EE183755.2|EE183755
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|149107238|gb|EE189121.2|EE189121
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|16919271|gb|BM074112.1|BM074112
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32850554|gb|CD990235.1|CD990235
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|13149594|gb|BG319916.1|BG319916
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37390281|gb|CF632369.1|CF632369
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|149066781|gb|EE286923.2|EE286923
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|60359268|gb|DN226241.1|DN226241
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|148945877|gb|EC891169.2|EC891169
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|5069943|gb|AI737908.1|AI737908
EST:     TAGGCTGATGACCGGAACCAACNCTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCCCCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32847162|gb|CD986843.1|CD986843
EST:     GGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: GGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32847141|gb|CD986822.1|CD986822
EST:     CACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: CACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|166541132|gb|EG308414.1|EG308414
EST:     GATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: GATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37377691|gb|CF625472.1|CF625472
EST:     TAGGCTGATGAATGGAAACAACACTGGACGGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGTTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32866186|gb|CF005868.1|CF005868
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAACTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37400341|gb|CF637522.1|CF637522
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|16926028|gb|BM079096.1|BM079096
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|5069945|gb|AI737910.1|AI737910
EST:     TAGGCTGATGAACGGAACCAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCNCCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|148944202|gb|EC889293.2|EC889293
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|148928436|gb|EE285202.2|EE285202
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37377101|gb|CF625125.1|CF625125
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32850616|gb|CD990297.1|CD990297
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGG
EST: gi|32831494|gb|CD971172.1|CD971172
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|44900831|gb|CK827376.1|CK827376
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGTTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|4730338|gb|AI649504.1|AI649504
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32840626|gb|CD980307.1|CD980307
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGGGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32849987|gb|CD989668.1|CD989668
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|14243824|gb|BG841478.2|BG841478
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37391875|gb|CF633182.1|CF633182
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|14245099|gb|BG873681.1|BG873681
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32916547|gb|CF021359.1|CF021359
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|211032181|gb|FL277401.1|FL277401
EST:     ACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: ACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|18165420|gb|BM335259.1|BM335259
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|14243429|gb|BG841091.2|BG841091
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|67013235|gb|CO441984.1|CO441984
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAANGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAA-GGAG
EST: gi|14203684|gb|BG837361.1|BG837361
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|45568706|gb|CK986190.1|CK986190
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37373887|gb|CF623268.1|CF623268
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|14244528|gb|BG840193.2|BG840193
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|213192508|gb|FM182601.1|FM182601
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|7242239|gb|AW574412.1|AW574412
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|40334263|gb|CK368333.1|CK368333
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|37398452|gb|CF636539.1|CF636539
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|211032182|gb|FL277402.1|FL277402
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|166419250|gb|EG304902.1|EG304902
EST:     AACACTGGACCGATTAACTT-GGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: AACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|166457737|gb|EG161293.1|EG161293
EST:     AAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: AAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|6601652|gb|AW256048.1|AW256048
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|5069937|gb|AI737902.1|AI737902
EST:     TAGGCTGATGAACGGAACCAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|83279397|gb|DV943405.1|DV943405
EST:     TAGGCTGATGAATGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 413

GTTGATGGTCTTATTAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 719

GTTGATGGTCTTATTAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1173

GTTGATGGTCTTATTAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1271

GTTGATGGTCTTATTAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggactgagttgggtctcatctttctgctaaatggctgtaactggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
                              taaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaatccatctgaattttaacttttgttactacacagtgagctacctacccaacctgtgtttttctattatatgcattctcctggactgagttgggtctcatctttctgctaaatggctgtaactggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG