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...actttgatctgtaatgcacattacactaagtattaacggataatatcatattctcttagttgttaatctttgtactagtttaatcatttatactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
species | Zea mays |
transcript | GRMZM2G044011_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|211495349|gb|FL234479.1|FL234479
genomic: AGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ATACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|91048656|gb|EB159074.1|EB159074
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|67018605|gb|CO447354.1|CO447354
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ATACACCAGGTGTGATGGCACTAATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|67024357|gb|CO453106.1|CO453106
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ATACACCAGGTGTGATGGCACTAATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|40303701|gb|CK348088.1|CK348088
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|71763506|gb|DR961443.1|DR961443
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|74236267|gb|DT644181.1|DT644181
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: GCACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|211359052|gb|FL430699.1|FL430699
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ATACACCAGGTGTGATGGCACTGATAAAAGATACAAAASCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|71442136|gb|DR823186.1|DR823186
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|50333168|gb|CO528294.1|CO528294
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|67021632|gb|CO450381.1|CO450381
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ATACACCAGGTGTGATGGCACTAATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|71302744|gb|DR787484.1|DR787484
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAATEST: gi|76016282|gb|DT943452.1|DT943452
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
tcatattctcttagttgttaatctttgtactagtttaatcatttatactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
tagtttaatcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttgatctgtaatgcacattacactaagtattaacggataatatcatattctcttagttgttaatctttgtactagtttaatcatttatactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - tgatctg
- - - - - - aatgcac
- - - - - - - - - - - acactaa