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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggccactctccctccctccctccttcccaatgtataatgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG

Basic information

species Zea mays
transcript GRMZM2G043198_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043198_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 3'ss of exon 10
gtcggccactctccctccctccctccttcccaatgtataa---tgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
|||   | ||||| ||| ||| | |  ||||  |   |     | | |     |    |||| || ||   || |   |  ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
gtccatctctctctctctctctcgctctccctctccctcgctctctgtgacaagttgttctcata-tgtactgtatctt--ctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCAGTTGAGAGGATTGCTGGAGCTGATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGG

upper sequence: GRMZM2G043198_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os08g42410.3 (Oryza sativa), 3'ss of exon 11
gtcggccactctccctccctccctccttcccaatgtataa---tgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
|||   | ||||| ||| ||| | |  ||||  |   |     | | |     |    |||| || ||   || |   |  ||||||||||||||||||||||||||||||||||| ||||||||||| |||                                                         
gtccatctctctctctctctctcgctctccctctccctcgctctctgtgacaagttgttctcata-tgtactgtatctt--ctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAATATCTTGATGCGCCA---------------------------------------------------------

upper sequence: GRMZM2G043198_T02 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA02G46380.1 (Glycine max), 3'ss of exon 12
gtcggccactctccctccctccctccttcccaatgtataatgtatagtctgcgtctc--tcgtaatgggt-tgaaatgtgcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
||    | || | | |   |   |  ||       | ||   ||  |  |   |||      | ||| || || | |   | |   |||||  |||||  | ||||| || ||||  |||||||||||||| || ||||| ||||| || |||||||| |||||||| || || || || || || || 
gtttatctctttacattgatttgtttttgtatgaatgtatcttactggttaactcttggcaatcatgagtgtgtacttctcttgcacagCACATCTGTCATTGAGGAGAGTTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCCGGGGCTGATGTTCCCATGCCATATGCAGCAAATCTGGAAAGA

upper sequence: GRMZM2G043198_T02 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA14G36540.3 (Glycine max), 3'ss of exon 12
gtcggccactctccctccctccctccttccc--aatgtat---aatgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
||    | || | | |   |   |  |||    || ||||   | ||  ||      | |  || ||   |  || | |   | |   |||||  |||||  | || || || ||||  |||||||||||||| || ||||| |||||||| |||||||| |||||||| || || || || || || || 
gtttatctctttacattgatttgtttttctatgaacgtatcttactggttaactcttggcaatcatatgagtgtgtacttctcttgcacagCACATCTGTCATTGAAGAAAGTTTTGGTTATCTTGATGCACCCGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGA

upper sequence: GRMZM2G043198_T02 (Zea mays), 3'ss of exon 11
lower sequence: AT5G50850.1 (Arabidopsis thaliana), 3'ss of exon 13
gtcggccactctccctccctccctcct---tcccaatgtataatgtatagtctgcgtctctcgtaat--gggttgaaatgtgcctttg------cagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
||   |  |  | |||   | |        ||  | | |    || || || |     | |   ||   || || || | |  |  |       |||   ||| |||||||| || ||||||  |||  | |||||||| |||||||||||||| ||||||||||| || |||||||| || || ||||| ||||| 
gttaacttcaattccttaattcaatagagatcttattatcacctggattgtataatagttttaaaacacggattaaactttttccgtaatggatcagTGCGTCGGTTGTAGAAGAGAGCTTTTCGTACTTGGATGCACCGGTCGAGAGGATTGCAGGAGCTGATGTTCCAATGCCGTATGCAGCTAACCTAGAGAGA

upper sequence: GRMZM2G043198_T02 (Zea mays), 3'ss of exon 11
lower sequence: Vv17s0000g00690.t01 (Vitis vinifera), 3'ss of exon 12
gtcggccactctccctccctccctccttc-----ccaatgtataatgt--atagtctgcgtctctcgtaatgggt--------tgaaatgtgcct------ttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
||   |  || |  | ||    ||    |     | |  || | ||     | || |      ||| |  |  ||        |  || ||| ||       ||||| ||||||||| | ||||| |||||||| | |||||||||||| ||||| |||||||| || || ||| | |||||||| || || || || |||||||| 
gttaccttctttttcaccaaatctatggcatgggcgagggtgtgatagtggtggtttagaatcctccttttaagtatttttcttacaacgtgtctgaatttctgcagTATGTCTGTTATTGAGGAGAGCTTTGATTCTCTTGATGCACCTGTCGAAAGGATTGCAGGGGCAGATATTCCCATGCCTTATGCAGCAAATCTTGAGAGA

upper sequence: GRMZM2G043198_T02 (Zea mays), 3'ss of exon 11
lower sequence: Vv01s0146g00310.t01 (Vitis vinifera), 3'ss of exon 13
gtcggccactctccctccctccctcctt-cccaatgtataatgtatagtctg-cgtctctcgtaatgggttgaaatgtgccttt---gcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
   |   | |||| ||||     |  |      ||| |   ||| |  |  | | |     ||| |      |  ||   ||||    ||||||| ||||||| ||||| |||||||  ||||||||||||||||| || |||||||| || |||||||| |||||||| || ||||| || || ||||| 
---gtttattctctctccactgatgttcgtttgatgcaggttgtttgataaggcattatatgtacttacactatctgcttcttttaaacagCATGGCTGTTGTTGAGGAGAGCTTTGGTTATCTTGATGCACCAGTGGAAAGGATTGCCGGGGCTGATGTTCCCATGCCTTATGCTGCTAATCTCGAGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31356807|gb|CD441164.1|CD441164
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|149060160|gb|EE157128.2|EE157128
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCCCCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|211534128|gb|FL427385.1|FL427385
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|6056687|gb|AW091092.1|AW091092
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|148995149|gb|EE034429.2|EE034429
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|110221099|gb|EC902997.1|EC902997
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|32829371|gb|CD969049.1|CD969049
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|71431245|gb|DR812295.1|DR812295
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|148928998|gb|EC874173.2|EC874173
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|76282095|gb|DV021663.1|DV021663
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|31349832|gb|CD434189.1|CD434189
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|50330846|gb|CO525972.1|CO525972
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|67038743|gb|CO464998.1|CO464998
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|5761992|gb|AI967040.1|AI967040
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|60396979|gb|DN229798.1|DN229798
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|463331|gb|T18298.1|T18298
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGNGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|4610194|gb|AI601033.1|AI601033
EST:     AAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: AAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|4612921|gb|AI603760.1|AI603760
EST:     GTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|71316610|gb|DR794980.1|DR794980
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|78024794|gb|DV493181.1|DV493181
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|5566803|gb|AI881669.1|AI881669
EST:     GTAACCGTA-AA-AAGGCTTCCCTC-ACAT-GGATTGGTGCGGAAATATG                         CATGTCTGTTG-AGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|31349833|gb|CD434190.1|CD434190
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|14245208|gb|BG873790.1|BG873790
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|93017392|gb|EB642912.1|EB642912
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|18177942|gb|BM379152.1|BM379152
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|6031329|gb|AW076186.1|AW076186
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|78086374|gb|DV514767.1|DV514767
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|78092118|gb|DV520492.1|DV520492
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|211427217|gb|FL439373.1|FL439373
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|60340342|gb|DN207315.1|DN207315
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTTTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|15082843|gb|BI389527.1|BI389527
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|24765246|gb|CA400405.1|CA400405
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|148945012|gb|EC890190.2|EC890190
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|211383123|gb|FL435718.1|FL435718
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|40336329|gb|CK370399.1|CK370399
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|71432758|gb|DR813808.1|DR813808
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|44900498|gb|CK827043.1|CK827043
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGTGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|148951825|gb|EC897588.2|EC897588
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|18168169|gb|BM338009.1|BM338009
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|60340970|gb|DN207943.1|DN207943
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|40334705|gb|CK368775.1|CK368775
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|6828052|gb|AW331695.1|AW331695
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|5566870|gb|AI881781.1|AI881781
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
EST: gi|37378649|gb|CF626026.1|CF626026
EST:     GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATG                         CATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG
genomic: GTAACCGTAGAAGAAGGCTTCCCTCAACATGGGATTGGTGCGGAAATATGgtcggccact ... gcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtataatgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG
                                            tgccttt  CT-rich tract
     ataatgtata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcggccactctccctccctccctccttcccaatgtataatgtatagtctgcgtctctcgtaatgggttgaaatgtgcctttgcagCATGTCTGTTGTAGAGGACAGCTTTGAGTATCTTGATGCACCAGTCGAGAGGATTGCTGGAGCTGATGTGCCCATGCCGTACGCTGCCAACCTTGAGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG