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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcgcaacacgtgttttcgaatcttgttggcatcggaactgcatgccagttttgctaacacattctcctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAAATGTTTCTCACCGAGGGTGACATCGAGGTTCTCGGTGTATAAGCATGAG

Basic information

species Zea mays
transcript GRMZM2G042398_T02
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18165495|gb|BM335334.1|BM335334
EST:     AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAG                         CGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
genomic: AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAGgtactgcgca ... cctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
EST: gi|26558555|gb|CA830790.1|CA830790
EST:     AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAG                         CGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
genomic: AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAGgtactgcgca ... cctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
EST: gi|18165055|gb|BM334900.1|BM334900
EST:     AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAG                         CGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
genomic: AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAGgtactgcgca ... cctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
EST: gi|22472517|gb|BU036997.1|BU036997
EST:     AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAG                         CGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
genomic: AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAGgtactgcgca ... cctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
EST: gi|211475864|gb|FL467329.1|FL467329
EST:     AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAG                         CGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
genomic: AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAGgtactgcgca ... cctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
EST: gi|87155667|gb|DY400456.1|DY400456
EST:     AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAG                         CGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
genomic: AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAGgtactgcgca ... cctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
EST: gi|18164178|gb|BM334017.1|BM334017
EST:     AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAG                         CGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA
genomic: AAGATGAGTGGGAGGTTTCCTATCTCTATCTCGCGTTTGTCCTGCGGAAGgtactgcgca ... cctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgttggcatcggaactgcatgccagttttgctaacacattctcctttcacagCGAGGCCAACCGCCTACCCAACGAAGAGCCAGCAACGCAAACAGAGGGAAAATGTTTCTCACCGAGGGTGACATCGAGGTTCTCGGTGTATAAGCATGAG
                               tgctaac  putative branch site (score: 1)
                                     cacattctcctttc  CT-rich tract