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...tagactagttgatgctaattttcttttattacgatttggaactccctggacagccatacactatcatcgtaaatgcaagcatactgtttttttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAAACTTGTTAATCCTTTCTTGTGGAGGTGCTACTCCATAGCAACGTTCCA
species | Zea mays |
transcript | GRMZM2G040017_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GATCCACAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|211272295|gb|FL440029.1|FL440029
genomic: GATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTGGATCCACAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|149085153|gb|EE174657.2|EE174657
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: TTATTTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|211010290|gb|FL457993.1|FL457993
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTGGATCCACAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|91868897|gb|EB400200.1|EB400200
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|32808758|gb|CD960992.1|CD960992
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: GATCCACAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|32796451|gb|CD948687.1|CD948687
genomic: GATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: GATCCGCAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|32836604|gb|CD976282.1|CD976282
genomic: GATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTGGATCCACAATCAA GTGATGGTTGATGCCGTAGATGTTGTAAGTAATGCGTCAAATACCTTTTGAEST: gi|148972711|gb|EE023671.2|EE023671
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
EST: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAA GTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
genomic: TTATCTAATAGTTGCTGCCAGTTTCTTTGTTCATGTTGATCCACAATCAAgtgagtagga ... tttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGA
ctggacagccatacactatcatcgtaaatgcaagcatactgtttttttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAAACTTGTTAATCCTTTCTTGTGGAGGTGCTACTCCATAGCAACGTTCCA
tactgttttttttttt CT-rich tract
atactgtttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagactagttgatgctaattttcttttattacgatttggaactccctggacagccatacactatcatcgtaaatgcaagcatactgtttttttttttcagGTGATGGTTGATGCCGTAGATGCTGTAAGTAATGCGTCAAATACCTTTTGAAACTTGTTAATCCTTTCTTGTGGAGGTGCTACTCCATAGCAACGTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttt