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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctttcaactttcctaacaaatacttgaagaatctgatagatatattgctgatttttttgccccatcttaacagAACCTGCATTGCAACCATACTTGAAGAACCTTTACACTTACATGTCAATATCAGGGCCTCACTTGGGTTACTGGTACAGTTCAAATTCTTTGTTCAATTC

Basic information

species Zea mays
transcript GRMZM2G039505_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039505_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 3'ss of exon 11
gtctctttcaactttcctaacaaatactt---gaagaatctgatagatatattgctgatttttttgccccatctt-aacagAACCTGCATTGCAACCATACTTGAAGAACCTTTACACTTACATGTCAATATCAGGGCCTCACTTGGGTTACTGGTACAGTTCAAATTCTTTGTTCAATTC
|| |  | |||||| |  || |||| | |       ||  | ||    ||  |||| | |   |     ||| || || |||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||
gtattatccaacttactcaataaattccttccaggcaagttcatctcgatggtgctaactcaatctttgcatgttgaatagAACCCGCATTACAACCATACTTGAAGAACCTGTACACGTACATGTCAATATCAGGCCCACACTTGGGCTACTGGTACAGCTCAAACTCTTTATTCAACTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatacttgaagaatctgatagatatattgctgatttttttgccccatcttaacagAACCTGCATTGCAACCATACTTGAAGAACCTTTACACTTACATGTCAATATCAGGGCCTCACTTGGGTTACTGGTACAGTTCAAATTCTTTGTTCAATTC
                           tgctgat  putative branch site (score: 3)
                                 tttttttgccccatct  CT-rich tract
                 atagatatatt  TA-rich tract