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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacttaattatacttatcctttgacttgctaaattcagtatgcactttttgtaaaattcgataatcatttctactgctatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACTCCCAGGGATTTGTATGAACACCTAAAGTCTACTTACGAG

Basic information

species Zea mays
transcript GRMZM2G038848_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038848_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g42110.1 (Oryza sativa), 3'ss of exon 11
------------------gtaagcacttaattatacttatcctt-tgacttgctaaattcagtatgcactttttgtaaaattcgataa-tca----tttctactgc-tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACTCCCAGGGATTTGTATGAACACCTAAAGTCTACTTACGAG
                   |    ||||| | || |    |  | |   |  ||   | | |||       | | || || | | ||| |||      ||  |||  ||||||| ||||||||||||||||||||||| |||  |||||| ||||| ||||||||||| |||  ||||||||| | || || |||||||| || |||
gtaagcacatttgcactcttgttgacttagtaattccaggctctgtagttccctctgtgctgtaccaggaatgtatagaagttgctaaatcaaatgactcatctgtatatttaacagAAACGTGGGATGCAATCTACTATGTTCGTTGAAATGGCACCTGGAGTGACTGCCAATGATTTGTATCAGCATCTCAAGTCTACATATGAG

upper sequence: GRMZM2G038848_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os10g35170.1 (Oryza sativa), 3'ss of exon 11
gtaagcacttaattatacttatcctttgacttgctaaattcag--tatgcactttt----tgtaa-------------------------aattcgat--aatcatttctactgctatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACTCCCAGGGATTTGTATGAACACCTAAAGTCTACTTACGAG
||||||||||| ||   | | |   |||||||  ||| | |||  | |||| ||||    ||||                          | ||  ||  |||  ||  || |    || || |||||||||| |||||||||||  ||| ||||||| ||||| ||||||||||| || | ||||||||  | || || ||||||||||| |||
gtaagcacttactttctcatttttgttgacttaataactccaggttctgcagttttgtactgtattgaacgcacctggagtgtgtgcattagttaaatcaaattcttcatatttacgttgaacagAAACGTGGAATGCAATCTACCATGTTTGTTGAAATGGCACCTGGAGTGACTGCCGGTGATTTGTACCAGCATCTCAAGTCTACTTATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37397485|gb|CF636042.1|CF636042
EST:     TTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: TTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|6448353|gb|AW181119.1|AW181119
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|88747566|gb|DY531707.1|DY531707
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|110202395|gb|EC884292.1|EC884292
EST:     CTGGGGAATCAAAAGTTACTTTCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGAGGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|32930019|gb|CF034831.1|CF034831
EST:     AATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: AATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|71762552|gb|DR960489.1|DR960489
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|148958090|gb|EC904281.2|EC904281
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|74234670|gb|DT642584.1|DT642584
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|60394782|gb|DN227652.1|DN227652
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|87155331|gb|DY400120.1|DY400120
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|26558690|gb|CA830925.1|CA830925
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|33093061|gb|CF053055.1|CF053055
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|148942778|gb|EC887805.2|EC887805
EST:     TCAAAAGTTACTATCAGCTTTACTCCACATTGGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: TCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|32931562|gb|CF036374.1|CF036374
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|40337039|gb|CK371109.1|CK371109
EST:     TTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: TTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|78080159|gb|DV508571.1|DV508571
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|22473066|gb|BU037546.1|BU037546
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|148943027|gb|EC888077.2|EC888077
EST:     CTGGTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGAGGCAATCTCCTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
EST: gi|67010559|gb|CO439308.1|CO439308
EST:     CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG                         AAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT
genomic: CTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATGgtaagcactt ... tatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcagtatgcactttttgtaaaattcgataatcatttctactgctatttaatagAAACGTGGGATGCAATCTACTGTGTATGTTGAATTGGCATCTGGAGTGACTCCCAGGGATTTGTATGAACACCTAAAGTCTACTTACGAG
           actttttgtaaaatt  TA-rich tract