Sequence
atgc intronic sequence ATGC exonic sequencegtactgacttctcacactctacaagtttgacttgatattgtataacctttagtaaatccatgtttaccaatacatgtccttttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G037683_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os01g21940.1 (Oryza sativa), 3'ss of exon 11
----gtactgacttctcacactctacaagtttgact--tgatattg-tataacctttagtaaatccatgtttaccaatacatgtccttttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
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gtaataactagcttgtctttccatctgatctcttctattaacattggtttaggccctcaatcatgcttcttaccttatg-gtggtgctccatttccagGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTAC
upper sequence: GRMZM2G037683_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA08G13560.2 (Glycine max), 3'ss of exon 12
gtactgacttctcacactctacaagtttgactt--gatattgtataacct---------ttagtaaatccatg---tttaccaatacatg---tccttttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
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gtg-tgtcttcaaaaatttactatgatgggtttttgctattccattttctgatgtcatcccagcaaatttgttcattttcctaatttatgatttcgttggactgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTC
upper sequence: GRMZM2G037683_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 12
------------gtactgacttct-cacactctacaagtttgacttgatattgt-ataacctttagtaaatccatgtttaccaatacatgtcctttt--atttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
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gtgtgtcttcgaaaatttactattatgggtttttgctattcaattttttgatgtcatcccagcaaatttgttcattttcctaatttcttatttctttggaatgttagGGAGGTGATGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211475898|gb|FL358552.1|FL358552EST: CTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGG GGAGGAGATGCATCTGTTAA
genomic: CTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAA
EST:
gi|67019283|gb|CO448032.1|CO448032EST: CTAAAACAACAGATTGCTTGCATACTTTCA-GCCACCACCTNCTTTGAGG GGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAA-TACTGAT
genomic: CTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGAT
EST:
gi|211442071|gb|FL307771.1|FL307771EST: CTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGG GGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGAT
genomic: CTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGAT
EST:
gi|91873183|gb|EB403140.1|EB403140EST: TAAAACAACAGATTGCTTGCATACTTTTCA-GCCACCACCTCCTTTGAGG GGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGAT
genomic: TAAAACAACAGATTGCTTGCATACTTT-CAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGAT
EST:
gi|211277652|gb|FL322062.1|FL322062EST: CTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGG GGAGGAGATGCATCTGTTAATTCTG-CCATTTATTTC-AAAAAGTACTGAT
genomic: CTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
145GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
65GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
73GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
41GTCTGGGATACTAAAACAACAGATTGCTTGCATACTTTCAAGCCACCACCTCCTTTGAGGgtactgactt ... ttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtataacctttagtaaatccatgtttaccaatacatgtccttttatttccagGGAGGAGATGCATCTGTTAATTCTGTCCATTTATTTCCAAAAAATACTGATCACATTGTTGTCTGCAATAAGACTTCATCAATATTCATCATGACTTTAC
gtataac putative branch site (score: 41)
tgtccttttatttcc putative PPT
tttagtaaat TA-rich tract