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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttaaaccgtgacccattaccacccctagcccatattccaaactctgagctcctggttactgtattttttctacttacattattatattcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC

Basic information

species Zea mays
transcript GRMZM2G035417_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035417_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g15360.4 (Oryza sativa), 3'ss of exon 10
catttaaaccgtgacccattaccacccctagcccatattccaaactctgagctcctggttactgtattttttc---tacttacattattatattcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC------
      ||  |   ||    |  ||  ||    |||      ||   | |||   |||||   |  |||  |     |||| |||   ||  ||| ||| ||||| |||| ||||||||||||||||||||| ||  | || || ||||| |||||||||||||| ||||||||  | |||||||| ||  ||||||||||||      
------aatggcatccttaaataacagctttttcattgatttaatcatcagca--tggttttcgagtttccttgtaaactttcatgtatactttcttga-cagctggagGCAATGGGGTTCAACCGTGAGCTCGTTTTGGAGGTCTTCTTCGCATGCAACAAGGATGAAGAGCTGGCTGCCAACTATCTTTTGGATCATGGCCATGAGT

upper sequence: GRMZM2G035417_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g15360.1 (Oryza sativa), 3'ss of exon 11
catttaaaccgtgacccattaccacccctagcccatattccaaactctgagctcctggttactgtattttttct---acttacattattatattcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC
      ||  |   ||    |  ||  ||    |||      ||   | |||   |||||   |  |||  |     |||| |||   ||  ||| ||| ||||| |||| ||||||||||||||||||||| ||  | || || ||||| |||||||||||||| ||||||||  | |||||||| ||  ||||||||||||
tgagacaatggcatccttaaataacagctttttcattgatttaatcatcagca--tggttttcgagtttccttgtaaactttcatgtatactttcttga-cagCTGGAGGCAATGGGGTTCAACCGTGAGCTCGTTTTGGAGGTCTTCTTCGCATGCAACAAGGATGAAGAGCTGGCTGCCAACTATCTTTTGGATCATGGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16921346|gb|BM075107.1|BM075107
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|5739686|gb|AI947481.1|AI947481
EST:     TGCCCCAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|28983432|gb|BQ538616.2|BQ538616
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|29130583|gb|CB381287.1|CB381287
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|60354372|gb|DN221345.1|DN221345
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|120480604|gb|EH210908.1|EH210908
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGA-TGGGG
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGG
EST: gi|93283697|gb|EB675961.1|EB675961
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|17929739|gb|BM266651.1|BM266651
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|89763928|gb|DY690916.1|DY690916
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|18173452|gb|BM348840.1|BM348840
EST:     GACAGTTACCCCAGAGGAACGGTAGACTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: GACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|5468863|gb|AI834654.1|AI834654
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|28984929|gb|BQ539309.2|BQ539309
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|60353833|gb|DN220806.1|DN220806
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|78024018|gb|DV492405.1|DV492405
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|60339492|gb|DN206465.1|DN206465
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|78121957|gb|DV540341.1|DV540341
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|18167512|gb|BM337351.1|BM337351
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|24767328|gb|CA402472.1|CA402472
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|60353847|gb|DN220820.1|DN220820
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|16925169|gb|BM078237.1|BM078237
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|5847201|gb|AW000280.1|AW000280
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|5325104|gb|AI783295.1|AI783295
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAG
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAG
EST: gi|5152838|gb|AI759136.1|AI759136
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|60347941|gb|DN214914.1|DN214914
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAAGGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|211377507|gb|FL195230.1|FL195230
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAAT
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAAT
EST: gi|18179525|gb|BM380735.1|BM380735
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|211092608|gb|FL283417.1|FL283417
EST:     GCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: GCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|12969776|gb|BG266651.1|BG266651
EST:     TGCCACAAGCGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAGCCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|7227769|gb|AW566410.1|AW566410
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|16377325|gb|BI991866.1|BI991866
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|10450875|gb|BE924799.1|BE924799
EST:     AGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: AGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|91875123|gb|EB405080.1|EB405080
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|7216944|gb|AW563051.1|AW563051
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: gi|211524979|gb|FL195247.1|FL195247
EST:     TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG                         CTCGAGGGAATGGG
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 339

GAACATACTAGGTCAACTGGCAGCTGCTGTGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 441

GAACATACTAGGTCAACTGGCAGCTGCTGTGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 512

GAACATACTAGGTCAACTGGCAGCTGCTGTGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 344

GAACATACTAGGTCAACTGGCAGCTGCTGTGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgagctcctggttactgtattttttctacttacattattatattcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC
                            tacttac  putative branch site (score: 344)
                                          tattcct  putative PPT
                 tgtattttttctactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catttaaaccgtgacccattaccacccctagcccatattccaaactctgagctcctggttactgtattttttctacttacattattatattcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCATGCAACAAGGACGAAGAGCTTACAGCCAACTACCTCCTGGATCATGGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - -taccacc
- - - - - - - - - - - - - - - - - - - - - - - - - gctcctg