1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagaccatgtgctgtgaagttccattactgaccttttgcagtcagttcatcagataaacacatctctgttttacttgaatattttgcccttttgttattatattttactgattattcgtggattggaatgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAGTGACTTCAATCTGGAGAGAGGAATCCACTCACCACATCCAAGTGAGGA
species | Zea mays |
transcript | GRMZM2G033526_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|6526771|gb|AW216050.1|AW216050
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TGTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|21759868|gb|BQ635409.1|BQ635409
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCCCAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60395622|gb|DN228492.1|DN228492
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60356976|gb|DN223949.1|DN223949
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|45567965|gb|CK985835.1|CK985835
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|13177888|gb|BG349071.1|BG349071
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGGCGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCCCAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|20802326|gb|BQ293376.1|BQ293376
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCCCAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|31357830|gb|CD442187.1|CD442187
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60355665|gb|DN222638.1|DN222638
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|76287860|gb|DV027428.1|DV027428
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60355637|gb|DN222610.1|DN222610
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|71595869|gb|DR906620.1|DR906620
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|116822697|gb|EC866119.1|EC866119
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60351363|gb|DN218336.1|DN218336
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|15199098|gb|BI423655.1|BI423655
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: AACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|37418065|gb|CF646693.1|CF646693
genomic: AACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|33467026|gb|CF244075.1|CF244075
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|213182699|gb|FM195337.1|FM195337
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|149102472|gb|EE287835.2|EE287835
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|78025170|gb|DV493557.1|DV493557
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|24765370|gb|CA400529.1|CA400529
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60394678|gb|DN227548.1|DN227548
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|12969057|gb|BG266002.1|BG266002
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TTTCTGACGACGCAGAAGAANCTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|5739696|gb|AI947272.1|AI947272
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAGGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60397119|gb|DN229938.1|DN229938
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|4967114|gb|AI692056.1|AI692056
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60400092|gb|DN232899.1|DN232899
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60338482|gb|DN205455.1|DN205455
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|60354896|gb|DN221869.1|DN221869
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAEST: gi|148929002|gb|EC874192.2|EC874192
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
EST: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTG AAAGCACAATATGTGAAGAAGGGGGAGTACGTCACTCTTGTTCAGAGCGGA
genomic: TCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGCAGCTTGCTGgtaagaccat ... tgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGA
ttgcccttttgttattatattttactgattattcgtggattggaatgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAGTGACTTCAATCTGGAGAGAGGAATCCACTCACCACATCCAAGTGAGGA
tactgat putative branch site (score: 735)
ttttgttattatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaccatgtgctgtgaagttccattactgaccttttgcagtcagttcatcagataaacacatctctgttttacttgaatattttgcccttttgttattatattttactgattattcgtggattggaatgttgaacagAAAGCACAATATGTGAAGAAGGGAGACTACGTCACTCTTGTTCAGAGCGGAGTGACTTCAATCTGGAGAGAGGAATCCACTCACCACATCCAAGTGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA