1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatatctaccgaccgagctttcatcgtgagctggtccttgttctctcgcaagcttattatgacctctggtcttattatacatatatacatggtctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTCGCCTGCTCCAGGAGCAACAAGAAAGATACATCACCTAGACTTGCATCT
species | Zea mays |
transcript | GRMZM2G032267_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|4314889|gb|AI444686.2|AI444686
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|60351813|gb|DN218786.1|DN218786
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|4826086|gb|AI667714.1|AI667714
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|21331671|gb|BQ487052.1|BQ487052
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|211496869|gb|FL295227.1|FL295227
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|60358619|gb|DN225592.1|DN225592
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|60347035|gb|DN214008.1|DN214008
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|22819003|gb|BU499093.1|BU499093
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|87157723|gb|DY402512.1|DY402512
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|26559755|gb|CA831990.1|CA831990
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|33096873|gb|CF056833.1|CF056833
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|5670860|gb|AI932123.1|AI932123
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|28983722|gb|BQ538786.2|BQ538786
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|4321073|gb|AI467736.1|AI467736
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|67016264|gb|CO445013.1|CO445013
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|148952636|gb|EC898467.2|EC898467
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|88757068|gb|DY541209.1|DY541209
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTCCCAGCGTGGTGGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTTTATTTGGATGCCAAATCCTCGGTTEST: gi|7162558|gb|AW520180.1|AW520180
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|7227451|gb|AW566092.1|AW566092
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|71420713|gb|DR805175.1|DR805175
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG GCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
genomic: CACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAGgtatatctac ... tctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCT
gcaagcttattatgacctctggtcttattatacatatatacatggtctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTCGCCTGCTCCAGGAGCAACAAGAAAGATACATCACCTAGACTTGCATCT
tctctatc CT-rich tract
tcttattatacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctaccgaccgagctttcatcgtgagctggtccttgttctctcgcaagcttattatgacctctggtcttattatacatatatacatggtctctatcagGCTGACCTCGAGGAAGTCAGCGGGCTCTATTTGGATGCCAAATCCTCGGCTCGCCTGCTCCAGGAGCAACAAGAAAGATACATCACCTAGACTTGCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
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