1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatcgtgcgatcatgcttttgctgaaactacacttgtcatgatagcacagggaactattaaatttgtttattataatttctgctttcattgcgtcccgtggactgtgtaatatgaaagtgaccccaattccgagtttgtatattctgcccaccagGTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAG
species | Zea mays |
transcript | GRMZM2G031572_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAG GTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGGEST: gi|211191456|gb|FL473730.1|FL473730
genomic: ACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAGgtatcgtgcg ... tgcccaccagGTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGG
EST: ACACTGCAGTGATCTCTYTGGATGCCCTCAAGCTCCTTCAAACATTGAAG GTGATTCATCCAAGTGCTCACCTCCCGAAGCTNTGAACAAAGTAAGGAAGGEST: gi|76291129|gb|DV030697.1|DV030697
genomic: ACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAGgtatcgtgcg ... tgcccaccagGTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGG
EST: ACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAG GTGATTCATCCAAGTGCTCACCTCCCGAAGCTC
genomic: ACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAGgtatcgtgcg ... tgcccaccagGTGATTCATCCAAGTGCTCACCTCCCGAAGCTC
gactgtgtaatatgaaagtgaccccaattccgagtttgtatattctgcccaccagGTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAG
ttctgccc CT-rich tract
taatatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgtgcgatcatgcttttgctgaaactacacttgtcatgatagcacagggaactattaaatttgtttattataatttctgctttcattgcgtcccgtggactgtgtaatatgaaagtgaccccaattccgagtttgtatattctgcccaccagGTGATTCATCCAAGTGCTCACCTCCCGAAGCTCTGAACAAAGTAAGGAAGGAGATTGTCGATCACATTGACCTGTGGCTATCAGAATGCCAAGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG