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gtgagcatttagttctacatgtcacttcgtcaccattttcctgttttatacgtatagactatatttttatccgatataaaagcagtaaacccttgtttttctgatgcctactatatgctcatggaagttctgctatccggctatgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAG
species | Zea mays |
transcript | GRMZM2G031572_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT TGCCATCATACTTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCTEST: gi|211191456|gb|FL473730.1|FL473730
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: ATCTCAAGACCCATGGCGCCACGCTTYTAAGCAGAAATCATCAGACGAAT TGCCATCATACTTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCTEST: gi|91877512|gb|EB407469.1|EB407469
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT TGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCTEST: gi|67038480|gb|CO464800.1|CO464800
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT TGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCTEST: gi|32827533|gb|CD967211.1|CD967211
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: ATCTCAAGACCCATGGCGCCATGCTTCTAAGCAGAAATCATCAGACGAAT TGCCATCATACEST: gi|31355151|gb|CD439508.1|CD439508
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATAC
EST: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT TGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
tttctgatgcctactatatgctcatggaagttctgctatccggctatgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAG
ttctgat putative branch site (score: 3)
tactatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatttagttctacatgtcacttcgtcaccattttcctgttttatacgtatagactatatttttatccgatataaaagcagtaaacccttgtttttctgatgcctactatatgctcatggaagttctgctatccggctatgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCTCTGGATGCCCTCAAGCTCCTTCAAACATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG