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gtaaatattactcgatgagccattgctcccaatgtctagctctgcagtcttccttaatcgaacctccatatttttataaccggataattcccactctgcgtcatatgccagtgtcatacttctgaacattgcaatgtttattctttggtgctaaatgcaaatgactgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAGAGATACGTGTACAGTTCAAGGATGCTCCTGGTGACATTTTTAGAT
species | Zea mays |
transcript | GRMZM2G031107_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGG GGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTTAATTCGAGGAAAGCAGEST: gi|71596396|gb|DR907147.1|DR907147
genomic: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGGgtaaatatta ... tgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAG
EST: CGAAAGATGGGAGG GGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAGEST: gi|78077421|gb|DV505855.1|DV505855
genomic: CGAAAGATGGGAGGgtaaatatta ... tgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAG
EST: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGG GGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAGEST: gi|18661166|gb|BM501251.1|BM501251
genomic: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGGgtaaatatta ... tgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAG
EST: CCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAAGG GGGTCCCAT-CATCCTCAANGCTGGCAAAGCACTAAATTCGAGGAAAGCAEST: gi|76281884|gb|DV021452.1|DV021452
genomic: CCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGA-GGgtaaatatta ... tgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCA
EST: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGG GGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAGEST: gi|78109019|gb|DV527436.1|DV527436
genomic: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGGgtaaatatta ... tgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAG
EST: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGG GGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAG
genomic: CCCTACTTTTGCATCTGTTGTACTGAGGGTACACAACGAAAGATGGGAGGgtaaatatta ... tgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAG
tctgaacattgcaatgtttattctttggtgctaaatgcaaatgactgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAGAGATACGTGTACAGTTCAAGGATGCTCCTGGTGACATTTTTAGAT
tgctaaa putative branch site (score: 2)
aatgtttattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatattactcgatgagccattgctcccaatgtctagctctgcagtcttccttaatcgaacctccatatttttataaccggataattcccactctgcgtcatatgccagtgtcatacttctgaacattgcaatgtttattctttggtgctaaatgcaaatgactgtcgcatagGGGTTCCATTCATCCTCAAGGCTGGCAAAGCACTAAATTCGAGGAAAGCAGAGATACGTGTACAGTTCAAGGATGCTCCTGGTGACATTTTTAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG