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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgtgagctttcaaagaaacacttcagttagtcttgaaacttcttcattttgatcgcctatctaaccttgtgtggttccctgtagGAGCTGAGAATGAAAAAGCTGGTATTGTAAATCAACAAAAATTAGAAAAGAAATTTGGTCAGTCTTCTGTCTTTGCAACATCCACACTTCTCGAAAATGG

Basic information

species Zea mays
transcript GRMZM2G028353_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os07g24190.2 (Oryza sativa), 3'ss of exon 7
gtaactgtgagctttcaaag-aaacacttcagttagtctt----gaaacttcttcattttgatcgcctatctaaccttgtgtggttccctgtagGAGCTGAGAATGAAAAAGCTGGTATTGTAAATCAACAAAAATTAGAAAAGAAATTTGGTCAGTCTTCTGTCTTTGCAACATCCACACTTCTCGAAAATGG
|||   |||| |||   ||  ||||| |   | | || ||    |||||  |||  |  | || || ||| ||| | |      ||    | ||||||||| |||||||| |||||||||||||||||||| ||  | |||||||||||||| || |||||||| ||||   ||||||||||||| || |||||
gta--cgtgaacttctgaactaaacattgtgggtggtttttcctgaaacacctttgtagtaatagcatatttaatccttcaatatttttggcagGAGCTGAAAATGAAAAGGCTGGTATTGTAAATCAACAGAAGCTGGAAAAGAAATTTGGCCAATCTTCTGTTTTTGTCGCATCCACACTTCTTGAGAATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttgaaacttcttcattttgatcgcctatctaaccttgtgtggttccctgtagGAGCTGAGAATGAAAAAGCTGGTATTGTAAATCAACAAAAATTAGAAAAGAAATTTGGTCAGTCTTCTGTCTTTGCAACATCCACACTTCTCGAAAATGG
                             atctaac  putative branch site (score: 2)
                                             ttccctgt  putative PPT
             ttcatttt  TA-rich tract