1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgtttttgtaaaccatgtgatcttctgaatgaaacttactggatttcttttacagagcttgatcagttttatcactgcttggttgtttttatgtgagagtgtgccatgatcttgtttctgttccttttgtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
species | Zea mays |
transcript | GRMZM2G028096_T04 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGEST: gi|74035234|gb|DT535723.1|DT535723
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGEST: gi|166555935|gb|EG131352.1|EG131352
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCEST: gi|60357771|gb|DN224744.1|DN224744
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGC
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGEST: gi|18164732|gb|BM334571.1|BM334571
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
EST: ACTTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAATAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGEST: gi|18167102|gb|BM336941.1|BM336941
genomic: AC-TTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGEST: gi|18168036|gb|BM337876.1|BM337876
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
EST: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAG GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
genomic: AACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgttttt ... gtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
tgtttttatgtgagagtgtgccatgatcttgtttctgttccttttgtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
tcttgtttctgttcct CT-rich tract
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttttgtaaaccatgtgatcttctgaatgaaacttactggatttcttttacagagcttgatcagttttatcactgcttggttgtttttatgtgagagtgtgccatgatcttgtttctgttccttttgtatgtacagGAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA