1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgatgactttttccctgaccttttgatgccttgctagtatcaatttagtatttctatttatgatagtgctagaagggcgagtagtcttcaaagcttgatctagtaatactctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTACATAGACCGCAGCAGCAGCCGTGACAGGGAGTATGACCGCAGAAGAAGC
species | Zea mays |
transcript | GRMZM2G028096_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|17929919|gb|BM266879.1|BM266879
genomic: CGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AGCTGAGTATGACAGAAG GTCCAGGAAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|31998127|gb|CD661940.1|CD661940
genomic: AGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGACGTCGAGCAGGGATCGCTEST: gi|18163534|gb|BM333373.1|BM333373
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGA-TTCGAGCAGGGATCGCT
EST: AGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|71764555|gb|DR962492.1|DR962492
genomic: AGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AAGGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|50324674|gb|CO519800.1|CO519800
genomic: AA-GAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|60357771|gb|DN224744.1|DN224744
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18174490|gb|BM349878.1|BM349878
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|17931777|gb|BM268737.1|BM268737
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|74232159|gb|DT640073.1|DT640073
genomic: AAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18175669|gb|BM350898.1|BM350898
genomic: AAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: TATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18167334|gb|BM337173.1|BM337173
genomic: TATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18164732|gb|BM334571.1|BM334571
genomic: GCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAATAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18167102|gb|BM336941.1|BM336941
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|16921430|gb|BM075145.1|BM075145
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: CGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18168036|gb|BM337876.1|BM337876
genomic: CGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|5566994|gb|AI881905.1|AI881905
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18165701|gb|BM335540.1|BM335540
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18166694|gb|BM336533.1|BM336533
genomic: GAAGAGAAGAACAAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18163210|gb|BM333049.1|BM333049
genomic: AAAAAACGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|29545137|gb|CB605315.1|CB605315
genomic: AGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18169111|gb|BM338951.1|BM338951
genomic: AGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: AGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTAEST: gi|18175096|gb|BM350484.1|BM350484
genomic: AGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
EST: CGGAAGCTAGACCGAGCTGAGTATGACAGAAG GTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
genomic: CGGAAGCTAGACCGAGCTGAGTATGACAGAAGgtgatgactt ... ctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTA
gtgctagaagggcgagtagtcttcaaagcttgatctagtaatactctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTACATAGACCGCAGCAGCAGCCGTGACAGGGAGTATGACCGCAGAAGAAGC
ctctaac putative branch site (score: 2)
tagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgactttttccctgaccttttgatgccttgctagtatcaatttagtatttctatttatgatagtgctagaagggcgagtagtcttcaaagcttgatctagtaatactctaacaccagGTCCAGGGAAAGGAGCGGGGAACGTGCCAGGGATTCGAGCAGGGATCGCTACATAGACCGCAGCAGCAGCCGTGACAGGGAGTATGACCGCAGAAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC