1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccctacttttcggatttactatttacacaatatatactacagtcgtttcttaccaacttccacaatctgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCAGCAACACGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC
species | Zea mays |
transcript | GRMZM2G027851_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|50333104|gb|CO528230.1|CO528230
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|89755588|gb|DY685957.1|DY685957
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|93282180|gb|EB674444.1|EB674444
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|71437105|gb|DR818155.1|DR818155
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|74238598|gb|DT646512.1|DT646512
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|78093452|gb|DV521826.1|DV521826
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|71760181|gb|DR958118.1|DR958118
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|71761590|gb|DR959527.1|DR959527
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|88750196|gb|DY534337.1|DY534337
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|71758416|gb|DR956353.1|DR956353
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|78074782|gb|DV503216.1|DV503216
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|26455862|gb|CA827445.1|CA827445
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|93281414|gb|EB673678.1|EB673678
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|37382323|gb|CF628103.1|CF628103
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|76013009|gb|DT940179.1|DT940179
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|76293702|gb|DV033270.1|DV033270
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|74239374|gb|DT647288.1|DT647288
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|19770144|gb|BQ034865.1|BQ034865
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|71427238|gb|DR808288.1|DR808288
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|78115472|gb|DV533860.1|DV533860
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|37399694|gb|CF637180.1|CF637180
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCAATATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|71760562|gb|DR958499.1|DR958499
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|71440636|gb|DR821686.1|DR821686
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCEST: gi|78080129|gb|DV508541.1|DV508541
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
EST: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG GTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
genomic: ACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtc ... tgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGC
tttcttaccaacttccacaatctgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCAGCAACACGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC
ttctgac putative branch site (score: 41)
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctacttttcggatttactatttacacaatatatactacagtcgtttcttaccaacttccacaatctgaatgtttctgacattttgcaatgaccatcagGTGTTTGGGATGATGACGAAGCCATTGATCCGGCTGCTGCTCCCTGCCTGCAGCAACACGGCCACCTCCGAGCCGTCCTCACCCAAGTCCCTGCACTCGC
- - - - - - - - - - - -tacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca