1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaaccgaactccaaatcttttttaaacttgaacagattcgaaattgttagattttatagttacaaaacgaactttggttccagGGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAACCCATCTTTTGAATGGGATGAGCTTGATCTCAAAGCATCTCAG
species | Zea mays |
transcript | GRMZM2G022837_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAA GGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAACEST: gi|32828329|gb|CD968007.1|CD968007
genomic: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaa ... ttggttccagGGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAAC
EST: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAA GGTCACAGCACTCTGGTGTEST: gi|211331036|gb|FL445935.1|FL445935
genomic: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaa ... ttggttccagGGTCACAGCACTCTGGTGT
EST: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAA GGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAACEST: gi|33098933|gb|CF058893.1|CF058893
genomic: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaa ... ttggttccagGGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAAC
EST: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAA GGTCACAGCACTCTGGTGT
genomic: GAGCTGAGTGCGAGTTCGCTGTCGGGATTAGATCAGCGTTACTTGGAAAAgtaaaccgaa ... ttggttccagGGTCACAGCACTCTGGTGT
tgaacagattcgaaattgttagattttatagttacaaaacgaactttggttccagGGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAACCCATCTTTTGAATGGGATGAGCTTGATCTCAAAGCATCTCAG
aaattgttagatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccgaactccaaatcttttttaaacttgaacagattcgaaattgttagattttatagttacaaaacgaactttggttccagGGTCACAGCACTCTGGTGTACGCCGGTGCGGGGATCGTTGAAGGTACAAACCCATCTTTTGAATGGGATGAGCTTGATCTCAAAGCATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT