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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtgtgctgaacggaaactgttttttttccttactgaaaacatgatctcttgcaggttgatgtttcgttcaatcatggaaccagagcagagctaatatatgtcctgctccggcgcatcagtttgttggcatgttgatgggggtcgcgtgttgtcaaaacggttgctgcgctggtaacgcgactcccaacATATTGCAGTTTCCCTCTGGCCGCAGTA

Basic information

species Zea mays
transcript GRMZM2G022777_T03
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849932|gb|CD989613.1|CD989613
EST:     TGATCTTATTATCGGGTAAGGCTTTCAAGCCTGACGAAATCTGCCCAANC                         ATATTGCAGTTTCCCTCTGGCCGCAGTA
genomic: TGATCTTATTATCGGGTAAAGCTTTCAAGCCTGACGAAATCTGCCCAACCgtaatgtgtg ... gactcccaacATATTGCAGTTTCCCTCTGGCCGCAGTA
EST: gi|32838847|gb|CD978528.1|CD978528
EST:     TGATCTTATTATCGGGTAAGGCTTTCAAGCCTGACGAAATCTGCCCAAC-                         ATATTGCAGTTTCCCTCTGGCCGCAGT
genomic: TGATCTTATTATCGGGTAAAGCTTTCAAGCCTGACGAAATCTGCCCAACCgtaatgtgtg ... gactcccaacATATTGCAGTTTCCCTCTGGCCGCAGT
EST: gi|32836962|gb|CD976640.1|CD976640
EST:     TGATCTTATTATCGGGTAAGGCTTTCAAGCCTGACGAAATCTGCCCAAC-                         ATATTGCAGTTTCCCTCTGGCCGCAGTA
genomic: TGATCTTATTATCGGGTAAAGCTTTCAAGCCTGACGAAATCTGCCCAACCgtaatgtgtg ... gactcccaacATATTGCAGTTTCCCTCTGGCCGCAGTA
EST: gi|32928805|gb|CF033617.1|CF033617
EST:     TGATCTTATTATCGGGTAAGGCTTTCAAGCCTGACGAAATCTGCCCAAC-                         ATATTGCAGTTTCCCTCTGGCCGCAGT
genomic: TGATCTTATTATCGGGTAAAGCTTTCAAGCCTGACGAAATCTGCCCAACCgtaatgtgtg ... gactcccaacATATTGCAGTTTCCCTCTGGCCGCAGT
EST: gi|33092259|gb|CF052253.1|CF052253
EST:     TGATCTTATTATCGGGTAAGGCTTTCAAGCCTGACGAAATCTGCCCAAC-                         ATATTGCAGTTTCCCTCTGGCCGCAGTA
genomic: TGATCTTATTATCGGGTAAAGCTTTCAAGCCTGACGAAATCTGCCCAACCgtaatgtgtg ... gactcccaacATATTGCAGTTTCCCTCTGGCCGCAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgggggtcgcgtgttgtcaaaacggttgctgcgctggtaacgcgactcccaacATATTGCAGTTTCCCTCTGGCCGCAGTA
                                    tggtaac  putative branch site (score: 2)
                                               ctccc  putative PPT