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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaccctacctttctgatacattttttggggggtctgtaagttgcaaaatctgatttgctgcatggttgtgtctgtactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC

Basic information

species Zea mays
transcript GRMZM2G020721_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020721_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 3'ss of exon 11
gtatgtaccctacctttct-gatacattttttgggggg------tctgtaagttgcaaaatctgatttgctgcatggttgtgtctgtactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC
|||||||   |  |  | | |||   |||| |            |  ||    ||||| | |||||| |||  ||| || |   ||||||||||||||| ||||| ||  ||||||||||||||||||||||| || ||| ||| ||||||||||||||
gtatgtattttttccatatcgattttttttataaaaaaaaatccttggtgtactgcaataactgatt-gctcaatgcttat---tgtactcaaaagTGTGTACATCTGCTTACGCAACTTCACTCAAGAATTCCGGTGCTGCTCTCTCACACTATTTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472577|gb|EB701535.1|EB701535
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5847621|gb|AW000700.1|AW000700
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5325022|gb|AI783213.1|AI783213
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5895688|gb|AW036934.1|AW036934
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5901242|gb|AW042342.1|AW042342
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5847179|gb|AW000258.1|AW000258
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|76933472|gb|DV173475.1|DV173475
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|6223805|gb|AW154936.1|AW154936
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGGCTACATATGCCTACTCATCTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|6227096|gb|AW155800.1|AW155800
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5895689|gb|AW036935.1|AW036935
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|86473236|gb|DY239606.1|DY239606
EST:     ACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGTTTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: ACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|71762483|gb|DR960420.1|DR960420
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGTTTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5343255|gb|AI795560.1|AI795560
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|5846835|gb|AI999918.1|AI999918
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGCCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
EST: gi|32936459|gb|CF041278.1|CF041278
EST:     AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC                         TGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT
genomic: AAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAACgtatgtaccc ... tactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtctgtaagttgcaaaatctgatttgctgcatggttgtgtctgtactcaaaagTGTCTACATATGTCTACGCAACTTCACTCAAGAATTCAGGGGCTTCTCCCTCACACTATTTGC
                  atctgat  putative branch site (score: 4)
               aaaatct  TA-rich tract