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gtttgtgatctgctttcctttgactttgttttgtatttctgtgcactgccactgacagccacaagttaatatcaatatggtctctctgcggtagtagtttatttctagtttttgctggaagttttaatcagaattttgtttatgtctacagGTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACTTTTGACTGGACACAGGAGGAAAGAGAGATGCTAAGACATAAG
species | Zea mays |
transcript | GRMZM2G020096_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGG GTTGGGCTGCTGTACGATEST: gi|22543186|gb|BU093624.1|BU093624
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGGgtttgtgatc ... atgtctacagGTTGGGCTGCTGTACGAT
EST: CTGCATTTTGG GTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACTEST: gi|89251366|gb|DY623152.1|DY623152
genomic: CTGCATTTTGGgtttgtgatc ... atgtctacagGTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACT
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGG GTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACTEST: gi|78544507|gb|DV622005.1|DV622005
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGGgtttgtgatc ... atgtctacagGTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACT
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGG GTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACTEST: gi|211306280|gb|FL001393.1|FL001393
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGGgtttgtgatc ... atgtctacagGTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACT
EST: GTGCTGATGGTGGCCCATGGAGGAGAT-GTGTGCGCTGCCTGCATTTTGG GTTGGGCTGCTGTEST: gi|91048671|gb|EB159089.1|EB159089
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGGgtttgtgatc ... atgtctacagGTTGGGCTGCTGT
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGG GTTGGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACEST: gi|211306279|gb|FL001392.1|FL001392
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGGgtttgtgatc ... atgtctacagGTT-GGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGAC
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGG GTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACTEST: gi|211306282|gb|FL001395.1|FL001395
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGGgtttgtgatc ... atgtctacagGTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACT
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGG GTTGGGCTGCTGTACGATGAGGAATCAT
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGCTGCCTGCATTTTGGgtttgtgatc ... atgtctacagGTTGGGCTGCTGTACGATGAGGAATCAT
gtttatttctagtttttgctggaagttttaatcagaattttgtttatgtctacagGTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACTTTTGACTGGACACAGGAGGAAAGAGAGATGCTAAGACATAAG
ttttaat putative branch site (score: 186)
ttttaatcagaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgatctgctttcctttgactttgttttgtatttctgtgcactgccactgacagccacaagttaatatcaatatggtctctctgcggtagtagtttatttctagtttttgctggaagttttaatcagaattttgtttatgtctacagGTTGGGCTGCTGTACGATGAGGAATCATTACAAAGCATTTTAGACATGACTTTTGACTGGACACAGGAGGAAAGAGAGATGCTAAGACATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG