1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...agcctcttcccctaattgccctttatgtatttcatttaggagtattgctcctaaaatttattagtgtcaaacgacttggccaattcatgatcttgttcagGTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTACTCGGCGGATGTTACTACCAGGGCTATGTGTCTTGTCTCTCTTTTGAAGC
species | Zea mays |
transcript | GRMZM2G017421_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTCAACAATCTTAGTATGTTAGACATGGAGGAACCGATCACG GTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTACEST: gi|8551657|gb|BE128828.1|BE128828
genomic: GCTGGTCAACAATCTTAGTATGTTAGACATGGAGGAACCGATCACGgtgagttaaa ... tcttgttcagGTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTAC
EST: TGCTGGTCAACAATCTTAGTATGTTAGACATGGAGGAACCGATCACG GTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTACEST: gi|78180334|gb|DV550707.1|DV550707
genomic: TGCTGGTCAACAATCTTAGTATGTTAGACATGGAGGAACCGATCACGgtgagttaaa ... tcttgttcagGTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTAC
EST: AAATGCTGGTCAACAATCTTAGTATGTTAGACATGGAGGAACCGATCACG GTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTAC
genomic: AAATGCTGGTCAACAATCTTAGTATGTTAGACATGGAGGAACCGATCACGgtgagttaaa ... tcttgttcagGTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTAC
tgctcctaaaatttattagtgtcaaacgacttggccaattcatgatcttgttcagGTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTACTCGGCGGATGTTACTACCAGGGCTATGTGTCTTGTCTCTCTTTTGAAGC
tcctaaa putative branch site (score: 113)
tcttgttc putative PPT
taaaatttattagtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcctcttcccctaattgccctttatgtatttcatttaggagtattgctcctaaaatttattagtgtcaaacgacttggccaattcatgatcttgttcagGTAACTGAATCTGATGCTGTGGATGCCGTAGAGATTGCTCTTCAGCGTTACTCGGCGGATGTTACTACCAGGGCTATGTGTCTTGTCTCTCTTTTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - tgccctt
- - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg