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gtaattcatctgtcaaatggaacactgtatactgctgtttttacatatatatttttgttacagttgtttcctcctgcagGGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAGTAATTTTTTATTCATGATTTGATTTTCAATAT
species | Zea mays |
transcript | GRMZM2G017089_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGTTACTGGTTCACATGATACAACTATTAAATTCGGGGATCTTGTAGCTG GGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGGEST: gi|32933221|gb|CF038033.1|CF038033
genomic: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatc ... cctcctgcagGGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGG
EST: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTG GGAGGACTATGTGTAEST: gi|71416740|gb|DR803804.1|DR803804
genomic: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatc ... cctcctgcagGGAGGACTATGTGTA
EST: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTG GGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGG
genomic: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatc ... cctcctgcagGGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGG
ctgtatactgctgtttttacatatatatttttgttacagttgtttcctcctgcagGGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAGTAATTTTTTATTCATGATTTGATTTTCAATAT
ttgtttcctcctgc CT-rich tract
tttttacatatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcatctgtcaaatggaacactgtatactgctgtttttacatatatatttttgttacagttgtttcctcctgcagGGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAGTAATTTTTTATTCATGATTTGATTTTCAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG