1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
...caacattttataatttggaatggggggagtatttgttttcctgtacttgttgatttttttttttttgtttttggcttactattgttgcttctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAAAGCTGGTTTAAAGAACAATAAACATGGTCCTAACGATCGTGGTTCTAA
species | Zea mays |
transcript | GRMZM2G009849_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAG GATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAEST: gi|22491327|gb|BU051250.1|BU051250
genomic: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgt ... ctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAA
EST: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAG GATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAEST: gi|19351752|gb|BM896284.1|BM896284
genomic: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgt ... ctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAA
EST: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAG GATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAEST: gi|32806646|gb|CD958880.1|CD958880
genomic: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgt ... ctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAA
EST: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAG GATTTTCTGAATCTGTTAEST: gi|87153866|gb|DY398655.1|DY398655
genomic: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgt ... ctttcatcagGATTTTCTGAATCTGTTA
EST: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAG GATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAEST: gi|22489504|gb|BU049427.1|BU049427
genomic: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgt ... ctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAA
EST: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAG GATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAEST: gi|87153811|gb|DY398600.1|DY398600
genomic: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgt ... ctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAA
EST: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAG GATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAA
genomic: TACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgt ... ctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAA
cttgttgatttttttttttttgtttttggcttactattgttgcttctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAAAGCTGGTTTAAAGAACAATAAACATGGTCCTAACGATCGTGGTTCTAA
ggcttac putative branch site (score: 83)
ttgttgcttctttc putative PPT
tgattttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacattttataatttggaatggggggagtatttgttttcctgtacttgttgatttttttttttttgtttttggcttactattgttgcttctttcatcagGATTTTCTGAATCTGTTAAGGTGGTGTCAACAAGCATGAGTTTGCCATCAAAAGCTGGTTTAAAGAACAATAAACATGGTCCTAACGATCGTGGTTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct