1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttcgatcagttgacgcgcgtgttgtctgaactctgaagcgaatcgcttaaactgcagcactagttagttacacacacacgcgcgcgtacgagaacactgacagacagagaaaaaagaaaatccgtgtgatgaattcttgccgtgttcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAACGTGCCGGAGAACGACGTGAAGAGGATGCGCGTGCAGTCGTCGTAGTAGG
species | Zea mays |
transcript | GRMZM2G003565_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAAC GTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCGGACGCGAACEST: gi|194716840|gb|FK933999.1|FK933999
genomic: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAACgtgagttcga ... tcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAAC
EST: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATTGTCCCTGACGAGAAC GTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAACEST: gi|60342864|gb|DN209837.1|DN209837
genomic: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAACgtgagttcga ... tcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAAC
EST: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAAC GTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAACEST: gi|211471127|gb|FL255671.1|FL255671
genomic: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAACgtgagttcga ... tcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAAC
EST: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAAC GTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAACEST: gi|211476174|gb|FL255694.1|FL255694
genomic: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAACgtgagttcga ... tcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAAC
EST: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATTGTCCCTGACGAGAAC GTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAACEST: gi|60339276|gb|DN206249.1|DN206249
genomic: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAACgtgagttcga ... tcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAAC
EST: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAAC GTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAAC
genomic: AAGTTTGGGTGTCGCCGTCAGAACGATACGCCATAGTCCCTGACGAGAACgtgagttcga ... tcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAAC
cagacagagaaaaaagaaaatccgtgtgatgaattcttgccgtgttcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAACGTGCCGGAGAACGACGTGAAGAGGATGCGCGTGCAGTCGTCGTAGTAGG
ttcgtct CT-rich tract
agaaaaaagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcgatcagttgacgcgcgtgttgtctgaactctgaagcgaatcgcttaaactgcagcactagttagttacacacacacgcgcgcgtacgagaacactgacagacagagaaaaaagaaaatccgtgtgatgaattcttgccgtgttcgtctgcagGTCCGTAAAGCAGGCGGAGGCACGGCACGAGGCAACGGCGCCGACGCGAACGTGCCGGAGAACGACGTGAAGAGGATGCGCGTGCAGTCGTCGTAGTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG