1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaatctatcgatcacagttcctttcatctgtcatcttgttaatgtccaatataagctccatctaacttgctattttcaaattccagTGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTTCTTATGTCCCCGGATATGTTTCTTCTGCAG
species | Zea mays |
transcript | GRMZM2G003509_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAG TGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGC-ATGANCGAGGTEST: gi|211510674|gb|FL361528.1|FL361528
genomic: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAGgtaatctatc ... caaattccagTGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGA-CGAGGT
EST: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAG TGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTTEST: gi|211126699|gb|FL314385.1|FL314385
genomic: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAGgtaatctatc ... caaattccagTGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTT
EST: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAG TGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTTEST: gi|61119215|gb|DN560176.1|DN560176
genomic: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAGgtaatctatc ... caaattccagTGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTT
EST: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAG TGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTT
genomic: TGGGCAACCAGGTTATACTACCCCTTGCACGCACCGTGGAGCATGAAGAGgtaatctatc ... caaattccagTGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTT
catcttgttaatgtccaatataagctccatctaacttgctattttcaaattccagTGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTTCTTATGTCCCCGGATATGTTTCTTCTGCAG
atctaac putative branch site (score: 2)
ctattttc putative PPT
tattttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctatcgatcacagttcctttcatctgtcatcttgttaatgtccaatataagctccatctaacttgctattttcaaattccagTGCTTGGAGGTTATTCGACTTCAAGGACATGGCTTTAGCCATGACGAGGTTCTTATGTCCCCGGATATGTTTCTTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG