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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgggttgaacttatgttgatttcactctctgaatgctttaggcatgtgctgagtctagcactggttaagctttcttttgaaactagtatcttatcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCTGACATTGATAGGAGTAATTTTGATTCATCTGATCAGTCTGCAAATGTCA

Basic information

species Zea mays
transcript GRMZM2G000749_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21987416|gb|BQ778944.1|BQ778944
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|211021453|gb|FL457596.1|FL457596
EST:     ATGCCTTTGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAG
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAG
EST: gi|211264027|gb|FL283565.1|FL283565
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|60341236|gb|DN208209.1|DN208209
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|88756696|gb|DY540837.1|DY540837
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|211534613|gb|FL443294.1|FL443294
EST:     TGCCTTTGAAGGAATAGGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: TGCCTTCGAAGGAATA-GCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|211264028|gb|FL283566.1|FL283566
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|67040818|gb|CO467073.1|CO467073
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|22543109|gb|BU093547.1|BU093547
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
EST: gi|211264029|gb|FL283567.1|FL283567
EST:     ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAG                         GTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT
genomic: ATGCCTTCGAAGGAATAGCTGAGCAACTAAAGAAGGAACGGCTGGAACAGgtttgttggg ... tcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagtctagcactggttaagctttcttttgaaactagtatcttatcttctgcagGTGGCACTGAAAAGTGGTCAGACCAGTGATGAAGTGACTCCTTTGGATGCTGACATTGATAGGAGTAATTTTGATTCATCTGATCAGTCTGCAAATGTCA
                                        tcttatcttct  CT-rich tract
                      tttctttt  TA-rich tract