1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaatagccccactcataatttttccttctcatcatgaatatttgttttcctgttgacttacatttcctttcatctggcagTATGGCACCAACCAGGATTCATGTCACATGTGCGCTCGTGCGCGAAACAACACCCGCTGGAAGGGTACATAAGGGAGTTTGCTCAACTTGGATTAAG
species | Zea mays |
transcript | AC217947.4_FGT002 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATCTTCACCTAG TATGGCACCAACCAGGATTCATGTCACATGTGCGCTCGTGCGCGAAACAACEST: gi|76932021|gb|DV172915.1|DV172915
genomic: CATCTTCACCTAGgtaaatagcc ... catctggcagTATGGCACCAACCAGGATTCATGTCACATGTGCGCTCGTGCGCGAAACAAC
EST: GTTGCCCCTCGACTTCAACCAAGATATTATTCTATTTCATCTTCACCTAG TATGGCACCAACCAGGATTCATGTCACATGTGCGCTCGTGCGCGAAACAAC
genomic: GTTGCCCCTCGACTTCAACCAAGATATTATTCTATTTCATCTTCACCTAGgtaaatagcc ... catctggcagTATGGCACCAACCAGGATTCATGTCACATGTGCGCTCGTGCGCGAAACAAC
ttctcatcatgaatatttgttttcctgttgacttacatttcctttcatctggcagTATGGCACCAACCAGGATTCATGTCACATGTGCGCTCGTGCGCGAAACAACACCCGCTGGAAGGGTACATAAGGGAGTTTGCTCAACTTGGATTAAG
gacttac putative branch site (score: 228)
cttacatttcctttc CT-rich tract
atgaatatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatagccccactcataatttttccttctcatcatgaatatttgttttcctgttgacttacatttcctttcatctggcagTATGGCACCAACCAGGATTCATGTCACATGTGCGCTCGTGCGCGAAACAACACCCGCTGGAAGGGTACATAAGGGAGTTTGCTCAACTTGGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG