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gtacggggtccctttttctccctaaaatttgagctactagatattttagttacaagttcagctgatgtatgttatgtgcccatgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAACTCATGGAAATCAAGAAGGAGCAGTCGAAGCGGTCAAGTAGTAGGCTTG
species | Zea mays |
transcript | AC209858.4_FGT002 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAA GAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAAEST: gi|32932056|gb|CF036868.1|CF036868
genomic: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAA
EST: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAA GAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAAEST: gi|37399955|gb|CF637321.1|CF637321
genomic: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAA
EST: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAA GAATTGTTGGCATTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAAEST: gi|166437833|gb|EG112297.1|EG112297
genomic: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAA
EST: TGCAAGGATAACTATAGGCTTCAACCTCGCCGCAATAGGATCATATAAAA GAATTGTTGGCEST: gi|211417128|gb|FL448753.1|FL448753
genomic: TGCAAGGATA-CTATAGGCTTCAACCTCGCCGCAAT-GGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGC
EST: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAA GAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAAEST: gi|78084366|gb|DV512759.1|DV512759
genomic: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAA
EST: AAAGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAA GAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAAEST: gi|211057077|gb|FL049064.1|FL049064
genomic: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAA
EST: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAANA GAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGEST: gi|78084367|gb|DV512760.1|DV512760
genomic: AATGCAAGGATACTATAGGCTTCAACCTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCG
EST: ATGCAAGGATACTATAGGCTTTCA-CCTCGCCGCAATGGATCATATAAAA GAATTGGTTGGCCGTTGAGATCAGATGEST: gi|166634734|gb|EG179420.1|EG179420
genomic: ATGCAAGGATACTATAGGCTT-CAACCTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTG-TTGGC-GTTGAGATCAGATG
EST: CTCGCCGCAATGGATCATATAAAA GAATTGTTGGCATTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAA
genomic: CTCGCCGCAATGGATCATATAAAAgtacggggtc ... catgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAA
actagatattttagttacaagttcagctgatgtatgttatgtgcccatgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAACTCATGGAAATCAAGAAGGAGCAGTCGAAGCGGTCAAGTAGTAGGCTTG
agctgat putative branch site (score: 24)
atattttagttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggggtccctttttctccctaaaatttgagctactagatattttagttacaagttcagctgatgtatgttatgtgcccatgttttagGAATTGTTGGCGTTGAGATCAGATGCACCTTTCCGTGATGCCAAGGCGAAACTCATGGAAATCAAGAAGGAGCAGTCGAAGCGGTCAAGTAGTAGGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG