1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtacaactttagctgtctcttggttcttccatttccccattttcagtttctgaaggatgcaagtggtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGGAGTCCAAGACCAACATGGGCTCTGTGCTTCTGGAAGCTGGACTTGCCA
species | Zea mays |
transcript | AC207890.3_FGT002 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAG ATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGEST: gi|211385596|gb|FL201908.1|FL201908
genomic: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAGgtacaacttt ... gtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
EST: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAG ATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGEST: gi|31352747|gb|CD437104.1|CD437104
genomic: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAGgtacaacttt ... gtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
EST: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAG ATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGEST: gi|89758370|gb|DY687573.1|DY687573
genomic: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAGgtacaacttt ... gtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
EST: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAG ATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGEST: gi|67033177|gb|CO461926.1|CO461926
genomic: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAGgtacaacttt ... gtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
EST: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGCAG ATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGNTCTTTGTGGEST: gi|213184087|gb|FM191543.1|FM191543
genomic: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAGgtacaacttt ... gtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
EST: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAG ATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGEST: gi|213191810|gb|FM182159.1|FM182159
genomic: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAGgtacaacttt ... gtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
EST: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAG ATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
genomic: ACGAAGCTATTGCTTTGATGAGGAGAAGGATACTTCAACGAGATGTGGAGgtacaacttt ... gtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGG
tggttcttccatttccccattttcagtttctgaaggatgcaagtggtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGGAGTCCAAGACCAACATGGGCTCTGTGCTTCTGGAAGCTGGACTTGCCA
attttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaactttagctgtctcttggttcttccatttccccattttcagtttctgaaggatgcaagtggtacatgcagATAGAGGTTGAAGCAGTTGATAGGACAGGAACGTTCATAGGTTCTTTGTGGGAGTCCAAGACCAACATGGGCTCTGTGCTTCTGGAAGCTGGACTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA