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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gactgttggtcgatattgcagttctcatatcactactttgcgctagaagcctagagcaccttttttagttacttgaacatctgttttgttcatggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAATGACAAG

Basic information

species Zea mays
transcript GRMZM5G876621_T02
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155958|gb|DY400747.1|DY400747
EST:     CCCTTGAGAGATACACACATTATTATGAACGATGGGCAGCCAATCAGTCG                         TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAATGACAAG
genomic: CCCTTGAGAGATACACACATTATTATGAACGATGGGCAGCCAATCAGTCGgtaagtattg ... catggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAATGACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagcctagagcaccttttttagttacttgaacatctgttttgttcatggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAATGACAAG
                                      ttttgttc  CT-rich tract
               ttttttagttactt  TA-rich tract