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gttagggaattctttaataacacgtgtgcatccttaattcctccagttaaaaccagttgctgtatgaatctgaattatgttttcctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTC
species | Zea mays |
transcript | GRMZM5G875238_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAG GTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCEST: gi|32859262|gb|CD998943.1|CD998943
genomic: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAGgttagggaat ... cctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
EST: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAG GTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCEST: gi|78179136|gb|DV549509.1|DV549509
genomic: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAGgttagggaat ... cctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
EST: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAG GTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCEST: gi|32839428|gb|CD979109.1|CD979109
genomic: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAGgttagggaat ... cctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
EST: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAG GTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCEST: gi|32859261|gb|CD998942.1|CD998942
genomic: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAGgttagggaat ... cctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
EST: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAG GTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCEST: gi|32836322|gb|CD976000.1|CD976000
genomic: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAGgttagggaat ... cctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
EST: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAG GTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCEST: gi|32859643|gb|CD999324.1|CD999324
genomic: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAGgttagggaat ... cctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
EST: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAG GTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
genomic: CGTCCAGTAATGCACACTGTGTCGCGTTCCTCATCAAAGACCCCCAAAAGgttagggaat ... cctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGC
tcctccagttaaaaccagttgctgtatgaatctgaattatgttttcctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTC
ttttcctgctt CT-rich tract
aattatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagggaattctttaataacacgtgtgcatccttaattcctccagttaaaaccagttgctgtatgaatctgaattatgttttcctgcttaagGTGAAAACGGTCGATGAGATGAGGGAGCGGCTGAGGATGCGTGGTCTCCGCTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG