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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcagccagagatgactttcgctgtccttttcacttcatcatctacgtaacatatgttgatcaaaatacatcctgtcacagGATCTGACACCGATCCCATATGCCTCAAAGGATGGGGACATCTCCCTTTTTTGTCGCTGAACCGGACATCTGTGTGTCAGCAGCAATCACTTCAGGGGGG

Basic information

species Zea mays
transcript GRMZM5G871861_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G871861_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g10340.1 (Oryza sativa), 3'ss of exon 10
gtaagtcagccagagatgactttcgctgtccttttcacttcatcatctacgtaacatatgttgatcaaaatacatcctgtcacagGATCTGACACCGATCCCATATGCCTCAAAG-GATGGGGACATCTCCCTTTTTT-----------GTCGCTGAACCGGACATCTGTGTGTCAGCAGCAATCACTTCAGGGGGG
||||||||||||||||| |||||| ||||| ||||| ||||| |||| |   ||||  |||| |   || | ||| ||||| ||||| |   || | ||||||  || ||||||  ||  | | ||  |||||||| |            |   |||||||||||  |||| |   ||||||||||||         
gtaagtcagccagagattactttcactgtctttttctcttcaccatcaatagaacacctgttaactgaa-tgcatactgtcgcagGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCG---GCAGCAATCACT---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149004383|gb|EE039059.2|EE039059
EST:     TTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTATCCACCT                         GATCTGACACCGATCCCATATGCCTCAAAGGA
genomic: TTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTATCCACCTgtaagtcagc ... cctgtcacagGATCTGACACCGATCCCATATGCCTCAAAGGA
EST: gi|149001459|gb|EE038760.2|EE038760
EST:     TTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTATCCCCCT                         GATCTGACACCGATCCCATATGC
genomic: TTGCCAGCATTTTGATCTCGACAGACGATTGATTGGATACCTATCCACCTgtaagtcagc ... cctgtcacagGATCTGACACCGATCCCATATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcacttcatcatctacgtaacatatgttgatcaaaatacatcctgtcacagGATCTGACACCGATCCCATATGCCTCAAAGGATGGGGACATCTCCCTTTTTTGTCGCTGAACCGGACATCTGTGTGTCAGCAGCAATCACTTCAGGGGGG
                                            tcctgtc  CT-rich tract
                                 atcaaaata  TA-rich tract