1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggtggagtcgatctttgagtatgagtacactatgaggtaccttgtacctagcctcggtgctaaggcctgagagggagggaagaaagaaatgaagaagctgctgctgctgctgcatatgcttgtggcggggtgttgtgtgcttgcagGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGACCTGCAGGGCCGGTACGTGGACCAGGAGGTGGAGTCGCTGATCCAGGTGG
species | Zea mays |
transcript | GRMZM5G870959_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGG GTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGACEST: gi|37379580|gb|CF626535.1|CF626535
genomic: TCGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGGgtaggtggag ... gtgcttgcagGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGAC
EST: TCGACCTCGCTAGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGG GTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGACEST: gi|76933035|gb|DV173293.1|DV173293
genomic: TCGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGGgtaggtggag ... gtgcttgcagGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGAC
EST: TCGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGG GTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGACEST: gi|149098898|gb|EE184911.2|EE184911
genomic: TCGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGGgtaggtggag ... gtgcttgcagGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGAC
EST: TCGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGG GTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGAC
genomic: TCGACCTCGCTCGTCTCGCGAACGATGACGACGTCATGCTCCTTGACTGGgtaggtggag ... gtgcttgcagGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtggagtcgatctttgagtatgagtacactatgaggtaccttgtacctagcctcggtgctaaggcctgagagggagggaagaaagaaatgaagaagctgctgctgctgctgcatatgcttgtggcggggtgttgtgtgcttgcagGTGAAGGCGCTGCTGAAGGAGAAGAAGCTGGAGCAGCTGGTGGACCCGGACCTGCAGGGCCGGTACGTGGACCAGGAGGTGGAGTCGCTGATCCAGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT