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...tttcttccttagcatatcacgtttcttcatgcttcagggatttagttttaaaaaggcatttcttaacatacttccgcttgttttgtttctgatgatccagCAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGAGAGCTTCCATCTTGCTACAATACTTCAAGGAATGTGGTGAAG
species | Zea mays |
transcript | GRMZM5G846548_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATG CAAATTACAAGGCAGTGCAGNCACTTTCACTCACTACGCTAAACTATGAGAEST: gi|18654522|gb|BM499327.1|BM499327
genomic: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATGgtgagtactt ... gatgatccagCAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGA
EST: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATG CAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGAEST: gi|18649151|gb|BM497970.1|BM497970
genomic: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATGgtgagtactt ... gatgatccagCAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGA
EST: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATG CAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGAEST: gi|211102153|gb|FL034739.1|FL034739
genomic: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATGgtgagtactt ... gatgatccagCAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGA
EST: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATG CAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGA
genomic: TTTGAGTGTATGGGCATCTTTTCTTTCTCTTACGATGTTCCATATGTATGgtgagtactt ... gatgatccagCAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGA
ttttaaaaaggcatttcttaacatacttccgcttgttttgtttctgatgatccagCAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGAGAGCTTCCATCTTGCTACAATACTTCAAGGAATGTGGTGAAG
atttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttccttagcatatcacgtttcttcatgcttcagggatttagttttaaaaaggcatttcttaacatacttccgcttgttttgtttctgatgatccagCAAATTACAAGGCAGTGCAGTCACTTTCACTCACTACGCTAAACTATGAGAGAGCTTCCATCTTGCTACAATACTTCAAGGAATGTGGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA