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...atgttataacaaacgaaagttggaaattagcttccccttgatttattgctgacttctgtttgcattgatcattttcctgtctgcacctgactaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTGCTTCTTTGTTGTGTGCTCATGGGCCTGATGTTGAGTGGAGAATATGTA
species | Zea mays |
transcript | GRMZM5G844173_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAA TTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTEST: gi|32926485|gb|CF031297.1|CF031297
genomic: ACGTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAGgtatgcaata ... ctaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATT
EST: ACTTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAA TTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTEST: gi|32926778|gb|CF031590.1|CF031590
genomic: ACGTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAGgtatgcaata ... ctaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATT
EST: ACTTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAA TTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTEST: gi|32926028|gb|CF030840.1|CF030840
genomic: ACGTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAGgtatgcaata ... ctaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATT
EST: ACTTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAA TTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTEST: gi|32924657|gb|CF029469.1|CF029469
genomic: ACGTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAGgtatgcaata ... ctaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATT
EST: ACTTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAACCAA TTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTEST: gi|211118245|gb|FL244858.1|FL244858
genomic: ACGTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAGgtatgcaata ... ctaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATT
EST: ACGTACATCATGAACCACTAGGNGGCTATGTATCATCATATAAGAAACAG TTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATT
genomic: ACGTACATCATGAACCACTAGGTGGCTATGTATCATCATATAAGAAACAGgtatgcaata ... ctaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATT
ttgctgacttctgtttgcattgatcattttcctgtctgcacctgactaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTGCTTCTTTGTTGTGTGCTCATGGGCCTGATGTTGAGTGGAGAATATGTA
atcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttataacaaacgaaagttggaaattagcttccccttgatttattgctgacttctgtttgcattgatcattttcctgtctgcacctgactaccggaagTTGGAAGTTCCTGCATCTGAGGCCACTATCGATGCCACTGCACAAGGCATTGCTTCTTTGTTGTGTGCTCATGGGCCTGATGTTGAGTGGAGAATATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - taacaaa
- - - - - - - - - - - - - - -gcttccc
- - - - - - - - - - - - - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacctg