Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catacatagtacgtaactgaattgcaccagatttgttttttccatagctattttgggctgtggctcttgggaaacctaaacagatacactttttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATT

Basic information

species Zea mays
transcript GRMZM5G825524_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825524_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 10
----catacatagtacgtaactgaattgcaccagatttgttttttccatagctattttgggctgtggctcttgggaaacctaaacagatacacttt-ttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATT
      | | |  | | |     ||||  ||     |||  |  |  ||     | ||   ||||      ||  |   |||   |  || | ||  ||| |||||||||||| ||||||  |||||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||||| ||||| || ||||||||||
ttttttttcttgctccttgctcaaattatacagttgttgcgtgctgtattatggtatta--ctgtcaaaactgaaa---ctagtgatctataattcatttggcagGTGATAGAGGCCCAAGTTGACATGCCAGTTGTTGGTGCAGTAACTTTATATGTATCACTTTTGACATTTACTCTCCGTGTGCATCCGGATCGGCTTGATT

upper sequence: GRMZM5G825524_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA14G40270.1 (Glycine max), 3'ss of exon 10
-catacatagtacgtaactgaattgcaccagatttgtttt-ttccatagctattttgggctgtggctcttgggaaacctaaacagatacactttttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATT
  || | |  |  ||  ||       || || | |   || ||  || |   | | | ||||    ||       |  ||||| |       ||  ||||||||||||||||| |||  |||||||||  |||| |||||  || || |  |||| || ||||| || |||||||||||||| ||||| || || |||||||
ttatcccttctttgtgccttctaaatactagttataccttattgtatggac-tatggagctgcaa-tccaataccatataaactgcatttggttggttgcagGTGATAGAAGCACAAGTTGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATT

upper sequence: GRMZM5G825524_T02 (Zea mays), 3'ss of exon 10
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 3'ss of exon 10
catacatagtacgtaactgaattgcaccagatttgttttttcca------tagctattttgggctgtggctcttgggaaaccta-----aacagatacactttttttg-----cagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATT
                || ||||     ||  ||   ||| |||      |   |||  ||   | |   |||||  | || ||      ||  ||  ||||  | ||     |||||||||||  | || | ||| |||||  |||| |||||  | ||||| | ||| || ||| |||||||||||||||| || |||||||| |||||||| |
----------------ctcaattctttgagtctttgctttcccagcctcctgcatataatgcaatatttttcttgaaatacatatatttgacttatggacttggtgtgggctacagGTGATAGATACACAGCTTGAGATGCCTATTGTCGGAGCTATGACTCTGTTTGTCTCTCTTTTGACTTTTACTCTCCGAGTTCATCCTGATCGGCTTGACT

upper sequence: GRMZM5G825524_T02 (Zea mays), 3'ss of exon 10
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 10
-catacatagtacgta-actgaattgcaccagatttgttttttccatagctattttgggctgtggctcttgggaaacctaaacagatacactttttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATT
   | |    || ||  | |   | |   ||  |||||    |            ||| ||   |     | ||||    || |  ||  || ||  | ||||| || ||||| ||   |||||||||  || ||||||| ||||||||||||  ||| ||||| ||||||||||| | ||| || ||||| ||||||||||
ttcttccctttatgtctatttcttcgttacacgtttgtgcaattaggtatataaatggactaaagtag--gagaaaatgtaatacttaatctgttcattcagGTCATCGAAGCACAGGTTGACATGCCTATTTTTGGAGCTGTAACTCTATATTCATCTCTTCTCACTTTTACTCTGCATGTGCACCCTGATCGGCTTGATT

upper sequence: GRMZM5G825524_T02 (Zea mays), 3'ss of exon 10
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 3'ss of exon 10
catacatagtacgtaactgaattgcaccagatttgttttttccatagctattttgggctgtggctcttgggaaacctaaacagatacactttttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATT
  | |    || |||  |   |  ||     ||| ||  ||    |  |   || |  |        |    ||  | |     || | |||  |  |||||||||||||| ||   ||||||||| ||| |||||||  ||||| ||||||| || ||||| || |||||||| ||||| |||||||| ||||||||||
ttttctgtatatgtatgtccttaacaatgactttcttaatttagaatatggatttgttttcactaagtattgaagttcattgtttataatttaatgtcagGTGATAGAAGCACAGGTTGACATGCCTGTTTTTGGAGCAATAACTTTATATGTCTCTCTTCTTACATTTACTCTTCGTGTTCATCCTGATCGGCTTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctattttgggctgtggctcttgggaaacctaaacagatacactttttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATT
                            acctaaa  putative branch site (score: 3)
                                         cacttttttt  putative PPT
                                          acttttttt  TA-rich tract