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...ctccttataattgatggaagaaaaaggagactgttacttggccttttcttgctgttgaatttttccgttttcatttcattattgttttttttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAGATCTATTTGGAAGTTTTGGCTTCAAGGACCAGCCAGTAATAATTGGAT
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|76293280|gb|DV032848.1|DV032848
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|71761327|gb|DR959264.1|DR959264
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|32909800|gb|CF014612.1|CF014612
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: AAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|7162447|gb|AW520069.1|AW520069
genomic: AAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: TTGGGCACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|71767567|gb|DR965504.1|DR965504
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|78114997|gb|DV533385.1|DV533385
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|71758092|gb|DR956029.1|DR956029
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAEST: gi|50322420|gb|CO517546.1|CO517546
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
EST: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAG CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
genomic: TTGGACACTGGAAACTCAATCATACTGTCTATTCCTTTGTAGCTGTCCAGgtattctctc ... ttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAA
ttcttgctgttgaatttttccgttttcatttcattattgttttttttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAGATCTATTTGGAAGTTTTGGCTTCAAGGACCAGCCAGTAATAATTGGAT
tttttccgttttcatt CT-rich tract
ttttcatttcattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccttataattgatggaagaaaaaggagactgttacttggccttttcttgctgttgaatttttccgttttcatttcattattgttttttttctgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAGCTCCAAAGATCTATTTGGAAGTTTTGGCTTCAAGGACCAGCCAGTAATAATTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - -attgatg
- - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttt