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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatactgcatttcatggttctccataggactctgtgtttcgtagttgcgccctgaactgaaacagattttgactcgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA

Basic information

species Zea mays
transcript GRMZM5G807767_T03
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211112381|gb|FL446192.1|FL446192
EST:     ATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG                         ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
genomic: ATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
EST: gi|108953379|gb|EC364711.1|EC364711
EST:     AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG                         ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
genomic: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
EST: gi|13557816|gb|BG549172.1|BG549172
EST:     AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG                         ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
genomic: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
EST: gi|32929396|gb|CF034208.1|CF034208
EST:     AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG                         ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
genomic: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgtgtttcgtagttgcgccctgaactgaaacagattttgactcgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
                                     ttttgac  putative branch site (score: 3)
                                  agatttt  TA-rich tract