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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttacttttcattgaaattctgtttattttcttaatctgctgctactcttgttttgttgcatgcttacatactgtgctgattatttactcttcggttgaagGTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG

Basic information

species Zea mays
transcript GRMZM2G704032_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704032_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 3'ss of exon 10
----------------------------------gtatgttacttttcattga-------aattctgtttattttcttaat--ctgctgctactcttgttttgttgcatgc---ttacatactg---tgctgattatttactcttcggttg-aagGTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG
                                   ||  |||  |   ||| |       || |   || |||| ||  ||   | | | |  | |||        ||| |   ||  ||||||   | |||  |  || |  || ||||  ||||||||| || |||||||||||||| || ||||| || |||||||||||||| | ||| ||||||||||||
gtacatgatagttgacttcagcctgttcatattgttaatttagatcctattaagctggtcaagttgtttcatttcctctatgtttacagttctttttgcgcatccacatccactttctatactgatttcctgcctggttgccttttggttttaagGTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149000343|gb|EE037503.2|EE037503
EST:     GAAGGGAGCAAGGAAGAACAAGCCCGGTTATTTTATACTGAATCTACTGG                         GTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA
genomic: GAAGGGAGCAAGGAAGAACAAGCCCGGTTATTTTATACTGAATCTACTGGgtatgttact ... tcggttgaagGTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA
EST: gi|149107037|gb|EE188931.2|EE188931
EST:     GAAGGGAGCAAGGAAGAACAAGCCCGGTTATTTTATACTGAATCTACTGG                         GTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA
genomic: GAAGGGAGCAAGGAAGAACAAGCCCGGTTATTTTATACTGAATCTACTGGgtatgttact ... tcggttgaagGTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA
EST: gi|110944040|gb|EE164197.1|EE164197
EST:     ATACTGAATCTACTGG                         GTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA
genomic: ATACTGAATCTACTGGgtatgttact ... tcggttgaagGTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA
EST: gi|60356237|gb|DN223210.1|DN223210
EST:     GAAGGGAGCAAGGAAGAACAAGCCCGGTTATTTTATACTGAATCTACTGG                         GTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA
genomic: GAAGGGAGCAAGGAAGAACAAGCCCGGTTATTTTATACTGAATCTACTGGgtatgttact ... tcggttgaagGTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgttttgttgcatgcttacatactgtgctgattatttactcttcggttgaagGTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG
                                     tttactcttc  CT-rich tract
                               tgattattta  TA-rich tract