1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgtgatttacgttagctctttgcctctgtgaattctgtttttcttttcaataaactgccacattcatattttctgcaacttcatgttattgtattgcagCATTAGACGGAGGGCTCTTGATTTATTATATGGCATGTGTGATGTTACAAACGCGAAAGAAATTGTTGAGGAGTTGTTGCAG
species | Zea mays |
transcript | GRMZM2G700148_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
tttcaataaactgccacattcatattttctgcaacttcatgttattgtattgcagCATTAGACGGAGGGCTCTTGATTTATTATATGGCATGTGTGATGTTACAAACGCGAAAGAAATTGTTGAGGAGTTGTTGCAG
attcatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgatttacgttagctctttgcctctgtgaattctgtttttcttttcaataaactgccacattcatattttctgcaacttcatgttattgtattgcagCATTAGACGGAGGGCTCTTGATTTATTATATGGCATGTGTGATGTTACAAACGCGAAAGAAATTGTTGAGGAGTTGTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
-tgtgatt
- - - - - - - - - - - gcctctg
- - - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - actgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtta