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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggacatatgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT

Basic information

species Zea mays
transcript GRMZM2G591258_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 19
gtattcctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttggggg-acata---tgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT
        || | ||||||         |  || |  |   ||     ||    |||||||| |   |||     |  |  |||    |||||||    | ||||    ||||| | || || ||||| ||||||||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| || || ||||||||||||||  | |
--------gtactgtttct-ggataattttgccataagagtca---tgttctattttattttttgaattccgcaattcatctataagaaaatcttactagtacatggtttgcagACTGCTAAGGAATATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCAT

upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 17
-----gtattcctgttcagtttcttatgccccctccccctc-tgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggac-atatgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT
     |||||   | |  ||      |      |  || |  | |    | | |||  | ||| |||  ||  ||  || ||  ||| |  |     |  | |   |  || ||||| | || || ||||| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | |
gtactgtattagggcttggtagtcggtataatgtttccatgatatttttaacaattatc-tttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcagACTGCTAAGGAATATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT

upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 19
-----gtattcctgttcagtttcttatgccccctccccctc-tgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggac-atatgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT
     |||||   | |  ||      |      |  || |  | |      | |||    ||| ||   ||  ||  || ||   || |  |     |  | |   |  || ||||| | || || ||||| | ||| ||||| || || ||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | |
gtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattatatttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcagACTGCCAAGGAATATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCAT

upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 19
gtattcctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttggggg-acata---tgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT
        || | ||||||  |      |  || |  |   ||     ||    |||||||| |   |||     |  |  |||     ||||||    | ||||    | ||| | || || ||||| ||||||||| | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||  | ||||||||||||||  | |
--------gtactgtttct-gtataatgttgccataagattca---tgttctattttattttttgaattccacaattcatctataagagaatcttactagtacatgatttacagACTGCTAAGGAATATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttcttccttcttagttctaattattgtgaaatcttgggggacatatgcagGCCGCGAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCT
                   ttctaat  putative branch site (score: 2)
               ttagttctaattatt  TA-rich tract