1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaactgtctcctcacttgtctgcagattacacttgcaatggagttcagtatgttctcatttcccaccataacttcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTGACAGTCAACTGATCTATGCAAGCTTTATGGATGCCACTGTTGGCATAT
species | Zea mays |
transcript | GRMZM2G550865_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|19057713|gb|BM736380.1|BM736380
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|19436915|gb|BM953325.1|BM953325
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|116814517|gb|EC857089.1|EC857089
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAAC-AGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|67024360|gb|CO453109.1|CO453109
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|19057573|gb|BM736240.1|BM736240
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCCTGGTTCCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGEST: gi|88747083|gb|DY531224.1|DY531224
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGG-CCT-GTT-CGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCG
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTGCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|19436916|gb|BM953326.1|BM953326
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|7216838|gb|AW562960.1|AW562960
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|67032677|gb|CO461426.1|CO461426
genomic: AGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: ANACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAAT-CACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|87157645|gb|DY402434.1|DY402434
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGA-TTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|19437048|gb|BM953458.1|BM953458
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGA-TGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|31357352|gb|CD441709.1|CD441709
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|60345367|gb|DN212340.1|DN212340
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTEST: gi|78083755|gb|DV512148.1|DV512148
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
EST: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAG TGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
genomic: AAACCCAGATTGCCATCTATGAAACTACAAAACTAGAACCAGTGAAGCAGgtaaactgtc ... tcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGT
acacttgcaatggagttcagtatgttctcatttcccaccataacttcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTGACAGTCAACTGATCTATGCAAGCTTTATGGATGCCACTGTTGGCATAT
ccataac putative branch site (score: 661)
cttcactt CT-rich tract
ataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactgtctcctcacttgtctgcagattacacttgcaatggagttcagtatgttctcatttcccaccataacttcacttacagTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCTGCATTCTCGTGTGACAGTCAACTGATCTATGCAAGCTTTATGGATGCCACTGTTGGCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT