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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattacagattaagtcttctttactcctataattttcctttgatgattgtgttgctgattaattacctgtgataaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCTTCAGGCAAGCAAAAGAGGATTGCTGTGATTACTCAAGGTGCTGATCCAG

Basic information

species Zea mays
transcript GRMZM2G540538_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 10
gtgattacagattaagtcttctttactcctataattttcctttgatgattgtgttgctgattaattacctgtgataaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCTTCAGGCAAGCAAAAGAGGATTGCTGTGATTACTCAAGGTGCTGATCCAG
|| | ||   ||    |||||||||  |     ||| |  | || |||||| |  |||||  ||||||||||   || ||||||||||||||| |||||||||| || |||||||| || || ||||| ||||| || || || |||||||||||||| |||||||||||||||||||||||||
gtaactattcatctc-tcttctttagac-----attcttttctggtgattgcgcagctgacaaattacctgtataaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCCTCTGGAAAACAAAAGAGGATTGCCGTGATTACTCAAGGTGCTGATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211425414|gb|FL239287.1|FL239287
EST:     ATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: ATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|14243872|gb|BG841640.2|BG841640
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|22819672|gb|BU499762.1|BU499762
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|6127248|gb|AW129894.1|AW129894
EST:     GCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: GCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60355025|gb|DN221998.1|DN221998
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60340909|gb|DN207882.1|DN207882
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|211153135|gb|FL380305.1|FL380305
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|111433446|gb|EE297763.1|EE297763
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|5777282|gb|AI974901.1|AI974901
EST:     AGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: AGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|78026829|gb|DV495216.1|DV495216
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60349992|gb|DN216965.1|DN216965
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60359018|gb|DN225991.1|DN225991
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|211542261|gb|FL396321.1|FL396321
EST:     GGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGARAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: GGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|211019335|gb|FL371822.1|FL371822
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37396080|gb|CF635327.1|CF635327
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|5055786|gb|AI734673.1|AI734673
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|16917923|gb|BM073496.1|BM073496
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67022254|gb|CO451003.1|CO451003
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|8102960|gb|AW927629.1|AW927629
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37397822|gb|CF636219.1|CF636219
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67018775|gb|CO447524.1|CO447524
EST:     TCNGCAACGAAACTGAGGCANAGATCTTTGCCAAAGTCAGAG-ATGGGAG                         ACTGAGA-TATTGAGGAGATTGCTTTGAAGATCTCTCAA-TAGCNTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60354205|gb|DN221178.1|DN221178
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60354850|gb|DN221823.1|DN221823
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67020661|gb|CO449410.1|CO449410
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAAGATGGGAG                         ACTGAGAATATTGAGGGAGAT-GCTNTGAAGATCTCTCAACTTCCTTTGGC
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGG-AGATTGCTTTGAAGATCTCTCAACTTCCTTTGGC
EST: gi|44900639|gb|CK827184.1|CK827184
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|5058596|gb|AI737072.1|AI737072
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|9953131|gb|BE639714.1|BE639714
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37376461|gb|CF624762.1|CF624762
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|40336443|gb|CK370513.1|CK370513
EST:     CGGCAACCAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: CGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60340637|gb|DN207610.1|DN207610
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|211103180|gb|FL427053.1|FL427053
EST:     AAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: AAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60348247|gb|DN215220.1|DN215220
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|71768279|gb|DR966216.1|DR966216
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67012632|gb|CO441381.1|CO441381
EST:     TCG-CAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTTGA-GATCTCTCAACTTCCTTTGGC
genomic: -CGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTT-GAAGATCTCTCAACTTCCTTTGGC
EST: gi|4827516|gb|AI668208.1|AI668208
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|22542193|gb|BU092631.1|BU092631
EST:     CGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCACGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: CGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCA-GAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37400560|gb|CF637635.1|CF637635
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60339525|gb|DN206498.1|DN206498
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67028257|gb|CO457006.1|CO457006
EST:     TCGGCAACGAA-CTGAGGCAAAGATCTTTGCCANAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTTGA-GAATCTCTCA-CTTCCTTTGG
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTT-GAAGA-TCTCTCAACTTCCTTTGG
EST: gi|19058768|gb|BM737435.1|BM737435
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|13150078|gb|BG320400.1|BG320400
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|29543822|gb|CB604202.1|CB604202
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|16919071|gb|BM074026.1|BM074026
EST:     ATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: ATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|32919378|gb|CF024190.1|CF024190
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCT
EST: gi|60356286|gb|DN223259.1|DN223259
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60338916|gb|DN205889.1|DN205889
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37393343|gb|CF633934.1|CF633934
EST:     CGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: CGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|211505041|gb|FL430356.1|FL430356
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|40303855|gb|CK348242.1|CK348242
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|5468771|gb|AI834562.1|AI834562
EST:     GGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         CCTTAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: GGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37380764|gb|CF627215.1|CF627215
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|78543928|gb|DV621426.1|DV621426
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|16137390|gb|BI894255.1|BI894255
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|211425411|gb|FL239284.1|FL239284
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|32868038|gb|CF007720.1|CF007720
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|5901147|gb|AW042247.1|AW042247
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67024289|gb|CO453038.1|CO453038
EST:     CGGCAACGAAACTGAGGCAAAGATCTTTTGC-AAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGGC
genomic: CGGCAACGAAACTGAGGCAAAGATCTTT-GCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGG-C
EST: gi|60359004|gb|DN225977.1|DN225977
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|32868039|gb|CF007721.1|CF007721
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|22490646|gb|BU050569.1|BU050569
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37382673|gb|CF628297.1|CF628297
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|60349736|gb|DN216709.1|DN216709
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67028036|gb|CO456785.1|CO456785
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|211425410|gb|FL239283.1|FL239283
EST:     ATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: ATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67024355|gb|CO453104.1|CO453104
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|67022396|gb|CO451145.1|CO451145
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAAGATGGGAG                         ACTGAGAATAT-GAAGAGATTGCTTTGAAGATCTCTNCA-CTTCCTTTGGC
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCT-CAACTTCCTTTGGC
EST: gi|67039373|gb|CO465628.1|CO465628
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|37400718|gb|CF637717.1|CF637717
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|15177615|gb|BI398554.1|BI398554
EST:     TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGC
genomic: TCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGC
EST: gi|211425416|gb|FL239289.1|FL239289
EST:     ATCTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: ATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
EST: gi|50330531|gb|CO525657.1|CO525657
EST:     CTTTGCCAAAGTCAGAGGATGGGAG                         ACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT
genomic: CTTTGCCAAAGTCAGAGGATGGGAGgtgattacag ... taaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataattttcctttgatgattgtgttgctgattaattacctgtgataaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCTTCAGGCAAGCAAAAGAGGATTGCTGTGATTACTCAAGGTGCTGATCCAG
                             gattaat  putative branch site (score: 3)
                            tgattaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgattacagattaagtcttctttactcctataattttcctttgatgattgtgttgctgattaattacctgtgataaattgtagACTGAGAATATTGAGGAGATTGCTTTGAAGATCTCTCAACTTCCTTTGGCTTCAGGCAAGCAAAAGAGGATTGCTGTGATTACTCAAGGTGCTGATCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT