1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgctttcttgcttcagagttatgcttgcaacctttttagcttaacctgaatcattccaatggctttactgtcaggtttcttcagAAGAATCAGATCACCTTCTTTACCTCTGCGTACGATGGTTCTTGTAAAGGTGCAGATGAGGATAAAACCAAATGATTGCATGTGAACGTTTTATATCATG
species | Zea mays |
transcript | GRMZM2G484880_T04 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|76016791|gb|DT943961.1|DT943961
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|60358481|gb|DN225454.1|DN225454
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA AAGAATCAGATCACCTTCTTTACCTCTGCGTACGATGGTTCTTGTAAAGGTEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcagAAGAATCAGATCACCTTCTTTACCTCTGCGTACGATGGTTCTTGTAAAGGT
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAA GEST: gi|211181083|gb|FL441231.1|FL441231
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAgtatgctttc ... gtttcttcag-
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAGTTTCTTCAEST: gi|211181083|gb|FL441231.1|FL441231
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTC-A--------Agtatgctttc ... gt
EST: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAGTTTCTTCA
genomic: GAGGAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTC-A--------Agtatgctttc ... gt
acctttttagcttaacctgaatcattccaatggctttactgtcaggtttcttcagAAGAATCAGATCACCTTCTTTACCTCTGCGTACGATGGTTCTTGTAAAGGTGCAGATGAGGATAAAACCAAATGATTGCATGTGAACGTTTTATATCATG
gcttaac putative branch site (score: 3)
tttcttc putative PPT
aatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttcttgcttcagagttatgcttgcaacctttttagcttaacctgaatcattccaatggctttactgtcaggtttcttcagAAGAATCAGATCACCTTCTTTACCTCTGCGTACGATGGTTCTTGTAAAGGTGCAGATGAGGATAAAACCAAATGATTGCATGTGAACGTTTTATATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT