1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaaacacatgtactagagaatcatgtgttttgactgtaattagtatataaaacgctgttagcgtggttcacatgctctagctccaatgttctgttatcagGAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGGATTCATCTACACTTGAAGCCATATTAAAGAAGCCACACGTACAATATAA
species | Zea mays |
transcript | GRMZM2G481548_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCCCGCATTAAGCAAGAGAAAGAACGGTTGAGATCTACAAAAGTTCCAG GAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGGEST: gi|32943142|gb|CF047961.1|CF047961
genomic: AGCCCGCATTAAGCAAGAGAAAGAACGGTTGAGATCTACAAAAGTTCCAGgtgagcatca ... ctgttatcagGAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGG
EST: AGCCCGCATTAAGCAAGAGAAAGAACGGTTGAGATCTACAAAAGTTCCAG GAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGGEST: gi|32841048|gb|CD980729.1|CD980729
genomic: AGCCCGCATTAAGCAAGAGAAAGAACGGTTGAGATCTACAAAAGTTCCAGgtgagcatca ... ctgttatcagGAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGG
EST: AGCCCGCATTAAGCAAGAGAAAGAACGGTTGAGATCTACAAAAGTTCCAG GAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGG
genomic: AGCCCGCATTAAGCAAGAGAAAGAACGGTTGAGATCTACAAAAGTTCCAGgtgagcatca ... ctgttatcagGAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGG
tataaaacgctgttagcgtggttcacatgctctagctccaatgttctgttatcagGAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGGATTCATCTACACTTGAAGCCATATTAAAGAAGCCACACGTACAATATAA
ttctgtt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacacatgtactagagaatcatgtgttttgactgtaattagtatataaaacgctgttagcgtggttcacatgctctagctccaatgttctgttatcagGAGGTGAATTTGCTGCTGAAGTTACTGCAGTATCCAACCAACCTGTAAAGGATTCATCTACACTTGAAGCCATATTAAAGAAGCCACACGTACAATATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - catgtac
- - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - cgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctcca